Vibrio coralliilyticus RE98: IX92_00610
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Entry
IX92_00610 CDS
T03444
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX92_00610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcy03019
]
IX92_00610
Enzymes [BR:
vcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX92_00610
Messenger RNA biogenesis [BR:
vcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX92_00610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIW17647
UniProt:
A0AAN0VW39
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All DBs
Position
1:complement(126147..127448)
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AA seq
433 aa
AA seq
DB search
MKKTHITEQKFADLGLHPQVVEGLKKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLNTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLVAETGIKAALAYG
GESYDKQLAKLEQGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSN
EHKMSLLQTLIEEEWPERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILE
QFTKGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPPIEEYIEHTIPVSDYDPSALIEDLPAPLRMRSNRPQQRRTNTGGSRSGNRR
NNNRSRQRHQKDS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttgggtttacacccccaagtt
gttgaaggtttgaagaaaaaagggttcgagttttgtaccccaattcaagccttggcgttg
ccggtactgctcaccggccaagacattgcaggtcaggctcaaacagggacaggaaaaacc
ctggctttcttgactgctacttttaaccatcttctgaacacaccagagcacgaaggtcgc
aagccgactcaaccacgtgcgattatcatggcaccgacccgtgagctggcaattcagatt
tacaatgatgctgaacctctggttgcagaaaccggcattaaagctgcgttagcttacggt
ggcgagagctacgacaagcaacttgctaagttagagcaaggtgtggacgtgctaatcggt
accacaggtcgcatcatcgacttttacaagcagcgtgtcttcaacctgaacaatattcag
gctgttgtgcttgatgaagcggatcgcatgttcgatcttggtttcatcaaagacattcgt
ttcctattccgtcgtatgccagaaccaaaagagcgcttgaacatgttgttctctgcgact
ctgtcgtaccgtgttcaagagctggctttcgaacatatgcacaacccagaacacgttgtg
gtggagccagaagtcaaaaccggccaccgtattcaggaagagctgttttacccgtctaac
gaacacaaaatgtctctgctacaaactcttattgaagaagagtggccagaacgcgcgatc
atctttgccaataccaaacacaagtgtgaatccgtatggggtcacctagcggctgatggc
caccgtgtaggtctattgacaggcgatgtaccgcagaagaagcgcgaacgcatcttagag
cagttcactaaaggtgaagttgacctgctagtagcaacagacgtggcagctcgtggtctt
cacatccctcaagtgactcacgtatttaactttgacctgcctgacgattgcgaagattac
gtacaccgcatcggtcgtacgggtcgtgcaggcgcaagtggccattcaatcagctttgcg
tgtgaagactacgccatcaacttgccgccgattgaagagtatattgagcacaccattcct
gtttcagactacgacccaagcgcactgatcgaagatctaccagcaccgctacgtatgcgt
tctaaccgtccgcaacaacgtcgcaccaatactggtggctcacgctcaggcaaccgtcgt
aacaacaaccgctctcgtcaacgtcaccaaaaggattcttaa
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