Vibrio coralliilyticus RE98: IX92_02700
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Entry
IX92_02700 CDS
T03444
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IX92_02700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcy03400
]
IX92_02700
Enzymes [BR:
vcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IX92_02700
DNA repair and recombination proteins [BR:
vcy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IX92_02700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_25
ResIII
AAA_11
AAA_12
UPF0242
Motif
Other DBs
NCBI-ProteinID:
AIW18005
UniProt:
A0AAN0VW80
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All DBs
Position
1:576215..579835
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AA seq
1206 aa
AA seq
DB search
MTSTSMVTSLDTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGSAESKHQQPLTVD
QILVVTFTEAATAELRDRIRARIHDARLAFSRGQSGDPVIQPLLEAIDDHSQAAEILLQA
ERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFITDESHLKAQVVADYWRRNFYPLPL
NLAGEVRRIWGAPAELLKKISPYLTGAPLLLSVPAMQGSMADLHSQNLKQIDELKTIWRE
GQQDYLALISDSDVNKRSYTKKSLPAWLETVDMWAASETTGYEYPDKLEKFAQNVLQEKT
PKGQAPSHPAFVAIEQFLAQPISLEAPLLAHAIEQCREMLAKAKQQKQWLSFDDLLTQLS
AAIDEDDSELLTQRIRSLYPVAMIDEFQDTDPLQYSIFSRIYLDHPQCGLFMIGDPKQAI
YGFRGADIFTYIKARNQVSSHFTLGTNWRSSSDMVAAVNQVFETPSSPFVYDDDIPFLPV
KSSPNADKRQWMIDGQLQPAMTYWLQEAEEKPLAKGEYHQAMAQACADEIHRILSAAQSE
RAFFDDGKSQHAIQAGDIAVLVRTGSEGRMIKQALADQGIASVYLSNRDSVFVSQVAEDL
QRLLQAVLTPENDRALRASLASELFALDAGTLDKLNNDENEWENAINEFKEYRRLWSQRG
VLPMLRSVMSKRHIAERLLEEDNGERSLTDFMHIGELLQQASQELDSDHGLLRWLAQAIS
DARNGLGGSEEQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFSYREAREAKYYDSAS
DKTILDITKQDASLQQADKERLAEDLRLIYVALTRAVYGCFVGAAPLRNGRSTKEPTGVH
HSAMGYLLQNGEPGGIADLTAALQQHAQQLSCVRLADLPESVNEKLVTREAEKQALHANE
LQNEIDRNWRITSYSGLVKQGASHHFDDAVTDILLLDVDSSDEQQEEEQLEPEKNIFTFP
KGARPGTFLHTLFEEVEFTESATSDSNSEIIVNLMESEQLDPAWLPILQQLVDTVLATPL
DGKQLKLNQKQPAQRLVEMEFLLPIEMLTAPALNRVIQRHDPLSAKAGDLGFHSTQGMLK
GFIDLVFEHQGKYYVLDWKSNYLGDNVADYHGEALKAAMADHRYDLQYQIYALALHRFLR
SRVPNYDYQTHFGGVYYLFLRGMDGASDHGIFSARPTLEFLEDMDSLIEGRPIEPKQSSS
GQMELL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacatccacgtcaatggtaacgtcactggataccatgacttttccgcttcatggcgcg
cgtttaatagaggcgtcagctggaaccggaaaaaccttcactattgctggcctgtacctc
aggttgctgctcggtcatggtagtgcagaaagcaaacaccaacagccgctaacggtggac
caaattctggtggtgacctttactgaggctgcgaccgccgaattgagagaccggattcga
gcccgaattcatgatgcgcgactggctttttctcgtggtcaaagcggtgatcccgtgatt
caacctttgcttgaagccattgacgatcattctcaagcggctgaaattctccttcaagcg
gaaaggcagatggatgaagcggcagtctatacgattcacggtttttgtcagcgcatgttg
actcaaaatgcgtttgagtccggtagccgttttaataacgagttcattactgacgaaagt
catcttaaagctcaggttgtggcggattactggcgacgtaatttctacccactaccgctt
aatcttgccggtgaagtgcgccgaatttggggagcgcctgccgaactgctgaaaaagatc
agcccttatttaactggggcacctttgctgctctcagtgccagcaatgcaaggcagtatg
gctgacctgcatagccaaaacctcaaacagattgacgaactcaaaacaatttggcgcgaa
gggcaacaggactaccttgctcttatcagcgactcggatgtcaacaagcgtagctacact
aagaaatcattgcctgcttggcttgaaacggtggacatgtgggcggcgagtgaaaccacg
ggctatgagtacccagataaactggaaaagtttgcacagaatgtcctgcaagagaagacc
cctaaagggcaggcgccaagccatcccgcttttgtggctatcgagcagtttctcgcccag
cctattagtcttgaagcaccactgctggcacacgccatagaacagtgccgcgagatgttg
gcgaaggccaagcagcagaaacagtggctgtcgtttgatgatctgctgactcagctgtcc
gcagcgattgatgaagatgacagtgagctgcttacgcagcgaatccgctctctctatccg
gtcgctatgatcgatgaatttcaggataccgacccgcttcaatatagcatattcagtcgt
atctatcttgatcatcctcagtgtggtttgttcatgattggtgatcccaaacaggcgatt
tacggttttcgtggcgcggatatatttacctacatcaaggcacgtaatcaggtctcctct
cacttcactcttggtaccaactggcggtcgagctcagacatggtcgcagcggtgaatcag
gtgtttgaaacgccgagcagcccgtttgtttatgatgatgacattccgtttcttccggtt
aaatcgagcccgaatgcagacaaacgccagtggatgatagatggacagcttcaaccagca
atgacttactggttacaagaagccgaggagaagccgttggcgaaaggtgaatatcatcaa
gccatggcgcaggcctgtgccgatgaaatccatcgtatcctgtcggcggctcagagtgag
cgcgcgttttttgatgacggaaagtctcaacacgcgattcaggccggagatattgcggta
ttggttcgaaccggcagtgaaggtcgaatgatcaaacaggccttggcagatcaggggatt
gccagcgtgtatctgtccaaccgagatagcgtatttgtctcacaggtagcagaagaccta
cagcgattactccaagcggtgctcacgccggaaaatgatcgtgctttaagagccagcctc
gcctctgaactgtttgctcttgatgcaggaactctcgacaaactcaataacgatgaaaat
gagtgggaaaatgccatcaatgagtttaaggagtatcgccgcttatggagtcaacgtggc
gtattgccgatgctgcgtagtgtgatgagcaaaaggcacatcgctgaacggttgcttgaa
gaagataatggcgagcgatctctgacggactttatgcacataggagagctgcttcagcaa
gccagccaagagctcgacagtgaccacggtttgctgcgctggttggctcaggccattagt
gatgcccgcaatggtctcgggggaagtgaggagcagatccagcgtttggaatcggagcgc
aatttggtgcagattgtcaccatccacaaatcaaaagggttggaatacgatctggtgttt
ttgccgtttgtattcagctatcgagaggcgagagaagccaagtattacgatagtgcttca
gacaaaaccattctggatatcaccaaacaggatgcttcattgcagcaagcggataaggag
cggctggcggaagacctgcgcttgatctacgtagcgcttacccgagcggtttatgggtgc
tttgtcggtgcggcgccgctacgtaatggtcgctcgacgaaagagccgactggcgtgcac
cacagtgcgatggggtacttattacaaaatggtgagccaggtggcatcgccgatttaacc
gctgcgttgcaacagcacgctcagcagctgagttgtgtccggttggcggatttaccagag
agtgtgaatgaaaagcttgttactcgcgaagcagagaagcaagcgctgcatgccaatgaa
ttgcaaaatgaaatcgatcgtaactggcgtatcaccagttattccggtctggttaagcag
ggagccagccaccattttgacgatgctgtgacggacattttgttgttggatgtcgactct
tctgatgagcagcaggaggaagagcagcttgagcctgagaaaaatatttttactttcccg
aaaggcgccagaccaggtaccttccttcacactttatttgaagaggttgagtttaccgaa
tctgcaacctcagacagtaatagcgaaatcattgttaacttgatggagagtgagcagctt
gacccagcttggttgccgatactgcaacaactcgtcgatactgtattggcaacgccgtta
gatggtaagcaattgaaactcaatcaaaaacagcctgcccaacgtttagttgaaatggag
ttcttgttaccgattgaaatgctgactgcgccagcattgaatcgagttattcagcgtcat
gaccctctgtctgccaaagcgggcgatctgggctttcattccacacagggaatgctgaaa
ggttttattgacttggtgtttgaacatcagggcaagtattacgtacttgactggaaatcc
aattaccttggagataatgtcgctgattatcatggcgaggccttgaaagcggcgatggcg
gatcaccgctatgatctgcaatatcaaatctatgcgctggctttacaccgattcctgcgc
tctcgtgtaccaaattatgactaccagactcactttggcggagtctattacctgttttta
cgtggtatggatggagcaagtgaccacggcattttctctgcacgcccgacacttgagttt
ctcgaagacatggacagcctgattgaagggcgtcctattgaaccgaaacagtccagctct
ggtcagatggagttactctaa
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