Vibrio coralliilyticus RE98: IX92_04200
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Entry
IX92_04200 CDS
T03444
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vcy
Vibrio coralliilyticus RE98
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcy03016
]
IX92_04200
Enzymes [BR:
vcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IX92_04200
Transfer RNA biogenesis [BR:
vcy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IX92_04200
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AIW18291
UniProt:
A0AAN0VXC0
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All DBs
Position
1:919480..920595
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AA seq
371 aa
AA seq
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MNYQIITRPDQLEKVCEQARNADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPTVI
DDMTAFVHLLKDTSVLKVLHACGEDLEVFNNSFGCLPYPMVDTQLMAAFLGHGLSTGFAS
LVESYLGVELDKSESRTDWLARPLTDKQLDYAAADVHYLLPLYEKLLEEITQAGWWEAAQ
QESDLLATKRIKSLDPEKAYLDVKGAWQLKPSELALLKPLATWRFKEAIRRDLALNFVFK
EHDLLTVARLGLQNKQRMEQEGLDIRSVQRHSARIISIVKSAKMTPVDEYPAKIERLMDM
PGYKQKFKTLKDEVKKASQASGLATEFLASKKQLNQLISWVWKKDRDPSILPDVMQSWRL
ELMGEKLNKLL
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcaaatcattacccgcccagaccagctagaaaaagtgtgtgaacaagctaga
aatgcagatgtcgtcatgcttgataccgagtttgtccgaacacgaacctactaccctcag
cttggtcttattcagttatttgatggtgaaacactttctctgattgacccaacagttatt
gatgatatgacggcgtttgtccaccttctcaaggacacatcagtgttaaaggttttacac
gcgtgtggtgaagatttagaagtgtttaacaacagctttggttgtctgccttacccgatg
gtggatacccaactgatggcggcattcttgggccacggattgtcaacgggctttgcttct
ttggttgagtcttatcttggcgtagaactggataaaagtgaatctcgtacagactggctt
gccagaccgctaacggataaacagctcgactacgcggccgcagatgtccactatctattg
ccattgtatgaaaagctgcttgaagaaattactcaggctggctggtgggaagcggctcag
caggaaagtgatttactggctaccaagcgtatcaagtcacttgatcctgaaaaagcctac
ttggatgttaagggcgcttggcaactgaaaccgagtgagttagctttattaaagccgctt
gccacttggcgcttcaaagaggcgattcgccgtgacctagcactgaatttcgtctttaaa
gaacatgatctacttactgtcgctcgtttaggcttacagaacaaacaaagaatggagcag
gaaggattagatattcgttctgtgcaacgccacagcgcacgtattatctcgattgttaaa
tcagccaaaatgacgcctgtagatgagtatccggctaaaattgagcgtttgatggatatg
ccaggctacaagcagaagtttaaaacccttaaggatgaagtgaaaaaagcctctcaagct
tctgggttggcgacggagtttttggcgtccaagaaacaattgaatcagttgattagctgg
gtatggaaaaaagatcgcgatccatcaatattaccagatgtgatgcaaagctggcgtttg
gaactgatgggtgaaaaactcaataaattgttgtaa
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