Vibrio coralliilyticus RE98: IX92_04210
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Entry
IX92_04210 CDS
T03444
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX92_04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcy03019
]
IX92_04210
03009 Ribosome biogenesis [BR:
vcy03009
]
IX92_04210
Enzymes [BR:
vcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IX92_04210
Messenger RNA biogenesis [BR:
vcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IX92_04210
Ribosome biogenesis [BR:
vcy03009
]
Prokaryotic type
rRNA processing factors
IX92_04210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIW18293
UniProt:
A0AAN0VWM0
LinkDB
All DBs
Position
1:complement(922509..925436)
Genome browser
AA seq
975 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALDTLDLPKGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDANPAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
LEHIQLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSINHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPKKLESMKEAEGREVVEPEVKPKKLEEPALKGFAAPAQSA
PAPKPPTKKAPEKKSEPREEKPGLVSRFFKALGSLFSSEPEKEQVEEKQEKAAKKDGQRN
NRNRRNRNDQRRRNSRDNRNENREDKRDNKRNKPQRERDEAANENKAASNERKQQNRKPK
QDRRNKQRDDAKASKVAEEGLKLAAEAQKDDKPNRAEEKTTKVKERRQRRKLSKQVRVKD
QKAKAEAVEEVKQVKAEAVAEAIEQSTEEVAAEDAEQPKQRRNRRSPRHLRASGQRRRRG
RDRRPNPFRLRKGGVASPEMAMGKVMPSYGISKPEPKHKAKAEQAATPEVATQALGGFAC
PEMAMGKVIVRRQEPVIEEPKVDEQAATVETTPVETPAPKSVEPQVVPEPVADTAAIVEA
EAAPAPVNTSSEIIVPTAFKGHASAPMAKAPGTTEMKEITVIAAPFREERYLSKGAGSQV
ASNKASAAMAKPQSF
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaaaaagaagagttgcgtgttgctttggttgat
ggtcagcgcttatatgatttagatatcgaaagcccaggccacgaatccaaaaaagcaaat
atctacaaaggacgtatcactcgcatcgaaccaagcctggaagcagccttcgttgactac
ggtgccgaacgacacggattcctacctctaaaagaaattgcccgcgaatatttccctgaa
ggttacacttaccaaggtcgtccaagcattaaagaagtgctgactgaaggccaggaagta
attgtacaggttgagaaagaagaacgtggcagcaaaggtgctgcactaacgacattcatc
tctcttgcaggtagttaccttgttctgatgcctaataaccctcgtgctggcggtatttct
cgtcgtatcgagggagatgagcgtactcaactgaaagctgcactggacacgttagaccta
ccaaaaggtatgggccttatcgtacgtacagcgggtgtaggcaaaagcgctgaagaatta
gagtgggatcttaacgtcttacttaatcactggggcgccatcaaacaagcttctgatgcc
aacccagctccactgcttattcaccaagaaagtaacgttatcgtccgagctattcgcgat
tatttgcgtcgtgatattggtgaaattcttatcgatagcaacaccatctacgaacgtgcg
ctagaacatatccaactagttcgtccagacttcgtcaatcgagtcaaaaagtatgacggt
gaagttccactatttagtcactaccagatcgaaagccagattgaatcagctttccagcga
gaagtgcgcttgccatcaggtggttcaatcgttattgacccaaccgaagcactaacatca
atcgatatcaactccgctcgcgcaacgaaaggcggagatatcgaagaaactgcactaaat
accaaccttgaagcggccgacgaaattgcacgtcaacttcgcctacgtgatctaggcggc
ttggtcgttattgacttcattgatatgacgccagtgcgtcaccaacgtgaagttgagaac
cgtctgcgagacgcagttcgtcttgatcgcgctcgagtccagattggtcgtatttcacgc
tttggcctactagaaatgtctcgccaacgcttgagcccatctctagcagaagcaagccat
catatctgtcctcgctgtagcggtacaggtgtggttcgtgataatgaatctcttgctctt
tctgttcttcgtttgatcgaagaagaagcattaaaggacaacacagctcaagttctggct
gttgttcctgttccgattgcgtcttaccttctgaacgaaaagcgtcgttcaatcaaccac
attgaacgcattcaggaagttaagatcacggtagttcctaactcagatatggaaacaccg
catttcgaagtaattcgagttcgtgaaggtgaagagtttgatttgctgtcttacttgctg
cctaaaaagctcgagtctatgaaagaagccgaaggccgtgaggttgtagagcctgaagtt
aaacctaagaagcttgaagagccagcactaaaaggttttgccgcaccggctcagtctgcg
ccagcaccaaaaccgccaacaaagaaagcaccagagaaaaaatcagaacctcgtgaagag
aaaccgggtctagtctctcgattcttcaaagcgttgggtagtctattcagctctgaacct
gaaaaagaacaggttgaagagaaacaagaaaaagcagcgaagaaagacggtcagcgtaac
aaccgcaaccgccgtaatcgcaacgaccaacgtcgtcgcaattctcgtgacaatcgtaac
gagaatcgtgaagataaacgcgataacaaacgcaataaacctcaacgcgaacgtgatgaa
gctgccaatgaaaataaagcagcatcgaacgaacgtaagcaacaaaatcgcaagcctaag
caggatcgccgtaacaagcagcgagacgacgcgaaagcgagcaaggttgctgaggaaggt
ttgaagctcgcggctgaagcgcaaaaagacgataaaccgaaccgtgcagaagagaaaacg
accaaggtaaaagaacgccgtcagcgtcgtaaactgagcaagcaggttcgagttaaagac
cagaaagcgaaagctgaagcggttgaagaagtaaaacaggttaaagctgaagctgtagca
gaagctatcgagcaatcgactgaagaagtcgcagcagaagatgcagaacaacctaaacaa
cgtcgtaaccgccgttctccacgtcatctacgtgcaagtggccaacgtcgtcgtcgtggt
cgcgatcgtcgccctaacccgttccgcttacgcaaaggtggtgttgcttcaccggagatg
gcaatgggtaaagtcatgccaagctacggtatctctaaaccagaaccgaagcacaaagca
aaagctgaacaggctgcaacaccagaagtggctactcaagcacttggtgggtttgcttgc
cctgaaatggcaatgggcaaagttatcgtacgtcgccaagagccagtgattgaagagccg
aaagttgatgagcaagctgctacggttgaaaccacacctgtggagacacctgcacctaaa
tcggttgagccacaagttgttccagaaccagttgcagacacggctgctattgtagaagcg
gaagcagcacctgcccctgttaatacaagctctgagattatcgtaccgacagcatttaaa
ggccacgcctctgctccgatggcgaaagcaccaggaaccacagaaatgaaagaaattact
gtgattgctgcacctttccgagaagagcgctacctatctaaaggtgcaggcagccaggtt
gctagcaataaagccagcgctgcaatggcaaagcctcaaagcttttaa
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