Vibrio coralliilyticus RE98: IX92_12035
Help
Entry
IX92_12035 CDS
T03444
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX92_12035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcy03019
]
IX92_12035
03400 DNA repair and recombination proteins [BR:
vcy03400
]
IX92_12035
Enzymes [BR:
vcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX92_12035
Messenger RNA biogenesis [BR:
vcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX92_12035
DNA repair and recombination proteins [BR:
vcy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IX92_12035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
TniB
AAA_22
JetA
zf-CXXC
Peripla_BP_4
TNFR_c6
Motif
Other DBs
NCBI-ProteinID:
AIW19730
UniProt:
A0AAN0VXR2
LinkDB
All DBs
Position
1:2595191..2597122
Genome browser
AA seq
643 aa
AA seq
DB search
MQTSGNQDKIHATLRAAFGFEQLRDGQYQVIDKVLDGKSCAAIFPTGSGKSLCYQLSALC
LPHLTLVISPLLALMKDQLEFLHSKGIAAASLNSSQSKEEVQRIMAQVRNGDVKILMVSV
ERLKNERFRHFLSQLSISQLVVDEAHCISEWGHNFRPDYLKLPQFQQELAIPQVLLLTAT
ATQAVLDDMSKKFNIAPHDITVTGFYRPNLDISVMPCSQAEKDDALLSVISQNPKLPTIV
YVTQQNSAERIAKLLAEQGVKAAAYHAGLDSETRERIQQDFMSGQTDCIAATIAFGMGVD
KSDIRQVIHFDLPKSIENYAQEIGRAGRDGQTSQCILLANEDGVCTLENFVYGDTPEYDE
IHNVIQQAVSSEQNWEVVISRLSSDSNIRQLPLKTLLVYMEMAKVITAQYSYFADYRFKF
IRPKQDIIEHFDGERRQFSEALFHCSPQARLWCQVDFDALWQSYQGERSRAVAALDYFHQ
NGWIELESKLMTEVYRVSPPQQSIEDLSEQLWQLFNNKERSDVERIHNLLALFKSKHCLS
KALANYFSDSQAPEQCGHCSVCRGEQHAWPDALNPQLERQQIADWLAPLQGKSASPLSNN
LKTKFLCGIATPWFTKIKARSLAGFGKLSEHPYQQVLSEIESL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacatcaggcaaccaagataaaatccacgctacattacgcgccgcttttggcttt
gagcaactaagagacgggcaatatcaagtaatagataaggttttggacggcaagtcctgt
gcggccattttcccgacgggttcaggaaaatctctttgttatcagctgtctgctttatgt
ttaccacacctgaccttagtcatttctcctctactagcattgatgaaagatcagctcgaa
ttcctgcacagcaaagggatcgcggcagcctctctcaactccagccaaagcaaggaagaa
gtccaacggatcatggcgcaagtgcgtaatggcgatgtgaagatcctaatggtgtctgtc
gaacgactgaaaaatgagcgttttcgtcactttttatctcagctcagtatctcgcaattg
gttgtcgatgaagcacactgtatctcagaatgggggcacaattttcgccctgactaccta
aagcttcctcagtttcaacaagaactcgcgattcctcaagttctccttttgaccgcaacg
gcaacgcaagcagtattggatgacatgagtaagaaattcaacatagcgccgcatgacatt
acggtcactgggttttatcgacctaatctggacatttcagtcatgccctgttcgcaagca
gaaaaagatgacgccttgttatcggtcatcagccaaaatccaaagttacctaccattgtt
tacgtaactcagcagaacagtgccgagcgtattgccaagttacttgccgaacaaggcgtt
aaagccgcggcttatcacgcgggactagacagtgaaacccgagaacgaattcagcaggat
tttatgtctggtcagacagattgcattgccgctaccatcgcttttggtatgggagtagat
aaatcggatatccgccaagtgattcattttgatttacctaaatcaattgaaaactacgcg
caagaaattggccgagcaggtcgagacggacaaacttcacaatgcattttgctcgccaac
gaggatggtgtgtgtacgttggaaaactttgtctatggcgatactcctgaatacgatgaa
atccataacgtcattcagcaagccgtttcgtcagagcaaaactgggaagtggtgatctct
cgtctctcatctgacagcaatattcgtcagttgccactgaaaacattgctcgtgtacatg
gagatggctaaggtcatcaccgcccaatacagttatttcgcagattatcgcttcaaattc
atcaggccaaagcaggatattattgaacactttgatggcgagcggcgccaatttagtgaa
gcgctgtttcactgttcaccgcaagccagactctggtgccaggttgattttgatgctctg
tggcaaagctatcagggtgaacgttcgcgtgctgtcgccgcactcgattattttcatcaa
aacggatggattgaactggaaagcaagttaatgaccgaagtgtatcgggtcagcccacct
caacaatctatcgaagacctcagtgagcagctttggcaactgtttaacaacaaagagcgc
agtgacgtcgagcgtattcacaacctgttagcgttgttcaaatccaaacactgtttgagt
aaggcgttagcaaactacttctctgacagccaagcccctgagcagtgtggtcactgcagc
gtatgtcgtggagaacagcatgcttggccagatgcgctaaacccacagctagaacgccag
cagattgctgactggttggcgcctctacaaggtaaatccgcctcaccattgtccaacaat
cttaaaacgaagttcctgtgcggcatagctaccccttggtttaccaaaatcaaagcgcgc
agcttagctgggtttggcaaactcagtgaacatccatatcagcaagtgctgagcgaaatt
gagtcactttag
DBGET
integrated database retrieval system
