Vibrio coralliilyticus RE98: IX92_12590
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Entry
IX92_12590 CDS
T03444
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vcy
Vibrio coralliilyticus RE98
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcy03009
]
IX92_12590
Enzymes [BR:
vcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX92_12590
Ribosome biogenesis [BR:
vcy03009
]
Prokaryotic type
rRNA helicases
IX92_12590
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_11
AAA_30
UMPH-1
AAA_22
AtuA_ferredoxin
Motif
Other DBs
NCBI-ProteinID:
AIW19834
UniProt:
A0AAE5EPY6
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All DBs
Position
1:2724993..2726225
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AA seq
410 aa
AA seq
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MIKNFAELELDENLLVAIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP
ALQYLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTNLNIFTITGGVQYQEHAD
ILAKTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWR
KQTLLFSATLEGKGVEGFTADLLKEPAEIDAEPSRRERKKIAQWYHRADDMAHKLALLKT
IINDQAERSIVFLKTRERLAELRVELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL
LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQTMMDR
VARYVKEEIKERFIKELRPKHKKPVFKKKKKDDKKKSVAKSKKKVTKKKK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaaaattttgctgaactagagctagatgaaaacctgctcgttgcaatcgaagaa
atgggttatacccgcccaacccagatccaggccgaagcaattccacaagctttggacggc
agggacattctcgcttctgcaccaactggtacaggcaaaaccgccgcttttgttctgcca
gctctacaatacttgcaggacttcccgcgtcgtaagccggggcctgctcgtgtgctgatc
ctgactcctactcgcgagttggcaatgcaagtcgccgatcaagctcgtgctctcgcaaaa
aacaccaatctgaacattttcaccatcactggtggtgtacagtatcaagagcacgccgat
attctcgctaagacacaagatatcgttgttgcaacgcctggtcgtttgatggaatacatc
gaagcggaacgttttgactgccgtgccattgaatggctgatccttgatgaagcagatcgc
atgctcgacatgggctttggcccgacagttgatcgcctttcttctgaatgtcgctggcgt
aaacaaaccttgctcttctctgcaacgctggaaggcaaaggcgtggaaggatttaccgca
gatctgcttaaagaacctgctgaaatcgacgctgaaccatctcgccgtgagcgtaagaag
attgcccagtggtatcaccgtgccgatgatatggcgcataagctggcgctgttgaaaacg
atcatcaacgaccaagctgagcgttctattgtctttctgaaaactcgtgaacgattagcc
gagctgcgcgttgaactggaaaaagcgcaaattccatgtgcttggattcaaggtgaaatg
ccgcaagatcgtcgtaataatgccattgctcgttttcgtgacggtaccgtaaacgtactt
ctggcaacagacgtcgcagcccgtggtatcgacttgccagatgtcagccatgtcattaac
tacgacatgccacgcagtgcagatgtgtacctccaccgtatcggccgtaccgctcgtgca
ggtaaaaaaggcaatgcaatctctttagttgaagcccatgatcaaaccatgatggaccgt
gtggctcgttacgtaaaagaagagatcaaagagcgctttatcaaagaacttcgaccaaaa
cacaaaaagccagtgtttaagaagaagaaaaaagacgacaagaaaaagtcagtcgctaaa
agcaaaaagaaagtcacgaagaagaaaaagtag
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