Vibrio coralliilyticus RE98: IX92_13960
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Entry
IX92_13960 CDS
T03444
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IX92_13960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcy03021
]
IX92_13960
03400 DNA repair and recombination proteins [BR:
vcy03400
]
IX92_13960
Enzymes [BR:
vcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IX92_13960
Transcription machinery [BR:
vcy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IX92_13960
DNA repair and recombination proteins [BR:
vcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IX92_13960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIW20078
UniProt:
A0A097AUW6
LinkDB
All DBs
Position
1:complement(3010076..3014281)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEIEEMREELQSTNSETKRKKITKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLASPAEAEKAYRTK
SAELHARVKVRITETVKDEDGNSTTETKLVDTTIGRAMLWQIVPSGLPYSIVNQKLGKKQ
ISHLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPDAKYTEIEEAEAE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKLMMENLSSETVVNREGEDEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTDEVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVMNKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKGDNDAVEAGETVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAAGNDVMIPGTEMPAHYFLPGKAIVNIEDGAEVGVGDTLSRIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRDGGDAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSTEFLVGEQVEYANVKIANRQLEAEGKELVRFERELLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQDRQAKRTEEQEGP
SAEQATDNLAALLNAGFSADE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagagtttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgagcgtgatggtctgttctgtgcgcgt
atctttggtccagtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcttcaccagttgctcacatctggttcctaaaatcactg
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgcgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgacctagaaaaatctcagatgctg
actgaagaagagtatctggatcgtctagaagagtggggtgatgaattcacggctaagatg
ggtgcagaagcgatcaaagacctacttgcgtctatggatctgcctgctgaaatcgaagaa
atgcgtgaagagcttcagtctactaactcagagactaagcgtaagaagatcactaagcgt
ctgaagctagttgaagcgttcgttcaatctggtaacaacccagagtggatgatcctaact
gtgcttccggtacttccgccagatctacgtcctctagtaccactagatggcggtcgcttc
gcgacttctgatctgaacgacctataccgtcgcgtaatcaaccgtaacaaccgtttgaag
cgtctattagagcttgctgctccggacatcatcgtacgcaacgaaaagcgtatgctgcaa
gagtccgttgatgcccttctagataacggtcgtcgcggtcgtgcgatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagcttgagactcgtggcctagcaacgacaatcaaagccgctaagaagatg
gtagagcgcgaagaagcagttgtttgggatatcctagacgaagttatccgcgaacaccca
gtactattgaaccgtgcacctacacttcaccgtctaggtatccaggcgttcgaaccagta
ctgatcgaaggtaaagcgattcagctacacccacttgtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgactcgtgacaagattaacgtg
aaaggcgaaggtatgtaccttgctagcccagctgaagctgagaaagcataccgtactaag
tctgcagagctacacgctcgcgttaaagttcgtatcactgagacagtgaaagatgaagat
ggcaacagcacaacagagaccaagctagttgatacaactatcggtcgtgcaatgctatgg
caaatcgtgccatctggtcttccgtacagcatcgttaaccagaagctaggtaagaagcaa
atctctcacctacttaacgaggcgtaccgtaagctaggtctgaaagatacggttatcttc
gctgaccaaatcatgtacacaggttttgcttacgcagcactttctggtgtatcggttggt
atcgacgacatggttgtgccagatgcgaaatatactgagatcgaagaagcggaagcagaa
gttcgcgaaattcaagagcagtaccaatctggtcttgtaactgcgggtgagcgctacaac
aaagtgatcgatatttgggcttcaaccaacgatcgcgtagcgaagttgatgatggaaaac
ctttcatctgaaacggtagtgaaccgtgaaggtgaagacgagcaacaagaatcgttcaac
agcatctacatgatggctgactcgggcgcacgtggttctgcagctcagattcgtcagctt
gcaggtatgcgtggtctgatggcacgtccagatggttcaatcatcgaaacgccgatcact
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtacacgagcatgactgtggcacgcacgaaggtatc
gacatgatgcctcacatcgaaggtggtgacgttaaagttgcactttctgagcttgctcta
ggtcgtgttgttgcagaagacgttctgaaaccaggtactgacgaagtgctgatcccacgt
aatactctgattgatgagaagtggtgtcagatcatggaagataactcagtagatagcatg
aaagtgcgctctgtagttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtcggcgttatcgctgct
cagtctatcggtgagcctggtacacagcttacaatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagcgaagacaactggtacggttaagcta
cacaacgctaagttcgtaatgaacaaagataagaagcttgttatcacgtctcgtgcttct
gagctgactatcatcgacgaattcggtcgtacaaaagagaaacacaaactaccttacggt
tccctactaagcaaaggcgacaacgatgcggttgaagctggcgaaacagtagcgaactgg
gaagcgcacactatgccaatcatcactgaagtggcaggtcgcatccagtttgtggacatg
atcgatggcgtaacagtttctcgtcaaacagatgatctaacaggtctatcttcaagtgaa
gtaactgaagccgccgctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgctgcgggtaatgacgtaatgatccctggtactgaaatgccagctcactacttc
ctacctggtaaagcgattgtaaacatcgaagacggcgcagaagtaggtgtgggtgatacg
ctatctcgtatccctcagaaatctggcggtaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagccgaaagagcctgcgattcttgctgagcacaca
ggtactgtgagcttcggtaaagaaacgaaaggtaaacgtcgtctagtaatcactcgtgac
ggcggtgacgcttacgaagagatgattcctaagcatcgtcagcttaacgtattcgaaggc
gagaaagttgaacgtggtgacgtgatcgcagatggtccagaatctccacatgacattcta
cgtctacgtggcatccacgctgtgactcagtacatcgcgaacgaagttcaagaagtatac
cgtctacaaggcgttaagattaacgataagcacattgagactatcgttcgtcagatgcta
cgtaagtgtacaatcactcacgctggtgactctacagagttcctagttggtgaacaggtt
gaatacgcgaacgttaagattgctaaccgtcagctagaagctgaaggcaaagagcttgtt
cgtttcgagcgtgagctacttggtattactaaggcatctctagcgactgaatcgttcatc
tctgcggcatcgttccaggagacaactcgcgtactaacagaagcagccgtttctggtaaa
cgtgatgagctacgtggtctgaaagaaaacgtaattgttggtcgtctaattccagcaggt
acaggtttcgcttaccaccaagatcgtcaagctaagcgcactgaagaacaagaaggtcct
tcagcagagcaagcaactgacaatcttgcggcattgctaaacgcaggtttctctgctgac
gagtaa
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integrated database retrieval system
