Vibrio coralliilyticus RE98: IX92_17945
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Entry
IX92_17945 CDS
T03444
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vcy
Vibrio coralliilyticus RE98
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcy03016
]
IX92_17945
Enzymes [BR:
vcy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IX92_17945
Transfer RNA biogenesis [BR:
vcy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IX92_17945
Prokaryotic type
tRNA splicing ligases
IX92_17945
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AIW20924
UniProt:
A0AAN0SE44
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All DBs
Position
2:complement(412106..413332)
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AA seq
408 aa
AA seq
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MCRNYNVIENEGRATIKAWTKGVPFDDKAQEQLNNIAGMSLVHSHIAVMPDVHLGKGATI
GSVIPSVDAVIPAAVGVDIGCGMLATKTTLTASQLPDNLSGIRHAFEAAVPHGRTGGRGR
ARDRGAWHNIPDVVAGEWKKLEARFETICHKHPAIRKSNHVKHLGTMGTGNHFLELCLDE
NDAVWIMLHSGSRGVGNRIGTYFIELAKKEMQRHQVNLPDMDLAYLEEGSAYFDDYVEAV
EWAQDFAAKNREIMMFNAISALKKQIPVAFSTAELAVNCHHNYISRERHFGKDCYVTRKG
AVRAEKGEMGIIPGSMGARSFIVRGLGNPESFNSCSHGAGRVMSRTQAKKVYNINDQIAA
TEGVECRKDASVIDEIPHAYKDIEKVMAAQKDLVEVVYTLKQIVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagaaactataacgttattgaaaatgaaggaagagccaccatcaaggcatggact
aaaggggtgccttttgatgataaagctcaagaacaattgaacaacatcgctggtatgtcg
ttagtccattcacatattgcggtgatgccagatgttcaccttggtaaaggcgcaacgatt
ggaagtgttattccttctgtggatgctgtgatacccgcagccgtcggggtcgatattggg
tgcggtatgttagcaacaaaaacaacgttaacggccagccagttacccgataatttatca
ggaatcagacatgcttttgaagcagcagtacctcatggtcgtactggaggaaggggaaga
gccagagatagaggagcttggcacaatattccagatgtcgttgctggcgaatggaaaaag
cttgaagcacgatttgaaactatttgccacaagcacccagcgataagaaaaagcaaccat
gttaagcatttaggcaccatgggcacgggtaatcactttttagaactgtgtctagacgaa
aacgatgcggtttggatcatgttgcactcaggaagtcgcggtgtaggaaatagaattggc
acttactttatagagcttgcaaagaaagaaatgcaacgccatcaagttaacttgcctgat
atggacttggcttacttggaagaaggcagcgcatactttgatgactatgtggaagcggtt
gaatgggcacaagattttgccgccaagaatcgtgaaataatgatgtttaatgctatatct
gcactgaaaaaacaaataccagtcgcgttttctaccgctgagttagcggtgaactgtcat
cacaactacatctctagggaacggcattttggcaaggattgttatgttactcgtaagggt
gcagtaagagccgaaaaaggcgaaatgggcattattcctggaagcatgggcgctcgctct
tttattgttcgtgggttaggaaaccctgagagttttaatagctgtagtcatggtgctgga
cgagtgatgtcgagaacacaagctaaaaaggtctacaacattaatgatcaaattgcagca
accgaaggagtagagtgcaggaaggatgcctctgtgattgatgaaattccgcatgcttac
aaggatattgaaaaagtcatggcagcccaaaaagacttagtggaagtggtttacacactg
aagcaaatcgtttgtgtaaaaggctaa
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