Vibrio coralliilyticus RE98: IX92_22275
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Entry
IX92_22275 CDS
T03444
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX92_22275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcy03019
]
IX92_22275
03009 Ribosome biogenesis [BR:
vcy03009
]
IX92_22275
Enzymes [BR:
vcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX92_22275
Messenger RNA biogenesis [BR:
vcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX92_22275
Ribosome biogenesis [BR:
vcy03009
]
Prokaryotic type
rRNA helicases
IX92_22275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
AIW21714
UniProt:
A0A0A0T4X0
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All DBs
Position
2:1351613..1353538
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AA seq
641 aa
AA seq
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MTDSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAF
SLPLLNKLELSQRKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLEKFGELVEKLQDTLEIDAAT
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRGRDRNFNNQDWDTYQ
LQVGREQGVQVKDIVGALANELGLVKGSIGAIKLAQGETYVQLPKAMSSETASKLRKLRI
RQKQVDAVVCDFNDFREPRRGGGRDGGRGGRDGGGRRDGGYRGNRDGNREGGYRGNREGG
RGGREGGRRDGERRFDRNRGGDHRGNYRGERGHGRDRRSEA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgtaattcagtttagcgacttagcgcttaacgactctatcctttctgca
cttgacggaatgggtttcgtttcaccaactccaattcaggcagcggctatcccacacctg
atggaaggtactgacgcactaggtaaagctcaaactggtaccggtaaaacggcagctttc
tctctaccacttctgaacaagcttgaactttctcagcgtaaaccacaagccatcgttcta
gcgccaactcgtgagctagcgattcaggttgctgctgaaataaagaaccttggtcaaaac
atttctggccttaaagtgcttgaaatctacggtggtgcatcaatcgttgaccaaatgcgt
gcacttaagaacggtgctcacattgttgttggcacaccaggtcgtgttcaagaccttatc
aaccgtgaacgtctgcacctagatgaagtacacacattcgttcttgatgaagcggatgaa
atgctaaacatgggcttcgttgatgacgtaactgaaatcatggagcacgctcctgaatca
gcacaacgcgtactcttctctgcaactatgcctccaatgctgaaaaacattgttgaacgc
ttcctacgtgaccctatcactatcgacgttgcaggtaaaaaccacactgtagacaaagta
gagcagcagttctgggttgtaaaaggtgtagagaaagacgaagcaatgtctcgtcttcta
gaaacagaagagactgacgcatcaatcgtattcgtacgtactcgtcaagatactgagcgt
cttgctgattggctatgtgctcgcggcttcaaagcgtctgcactacacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgtagcacgtggccttgacgttccacgtatcacacacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggccgtacaggtcgtgctgga
cgtaaaggtaaagcgatccttctagttcgcactaaccaaattcgtatgcttcgcactatc
gagcgcgtgactaagtcttcaatggaagagattcaacttccactacgtgacaaggttgca
gaagctcgtctagttaaacttggtgctgagctagagcaagagaaagaacacaaatctctt
gagaaattcggcgagcttgtagagaagctacaagacacactagagattgacgcagcaacg
cttgcagcaatcctactgaaacgccagcaaggcaaacgccctctattctacattggcgaa
gacccaatgattgaagcgattgagcgtgacaagcaacgtcgtaaagagcgtcgcgaaggt
ggccgtgatggtcgtggtcgtgaccgtaacttcaacaaccaagactgggatacttaccag
ctccaggttggtcgtgagcaaggcgttcaggttaaagatatcgttggtgcattggcaaac
gagcttggcctagttaaaggttcaatcggtgcgattaaactagcacaaggcgagacttac
gttcagctaccaaaagcaatgtcttctgaaacggctagcaaactacgcaagctacgtatc
cgtcagaaacaagtagatgccgtagtatgtgacttcaacgatttccgtgaaccacgtcgt
ggcggcggtcgtgatggtggtcgtggtggtcgcgatggcggtggtcgtcgtgacggtggt
taccgtggtaaccgtgacggcaatcgcgaaggcggctaccgtggtaaccgtgaaggcggt
cgtggtggacgcgaaggtggtcgtcgtgatggcgaacgtcgcttcgatcgtaaccgtggt
ggcgatcaccgtggtaactaccgtggcgaacgtggtcatggccgtgaccgtcgcagcgaa
gcttaa
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