Vibrio cholerae O27 10432-62: VAB027_1305
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Entry
VAB027_1305 CDS
T03829
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vcz
Vibrio cholerae O27 10432-62
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcz03009
]
VAB027_1305
Enzymes [BR:
vcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VAB027_1305
Ribosome biogenesis [BR:
vcz03009
]
Prokaryotic type
rRNA helicases
VAB027_1305
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
Helicase_C_2
AAA_22
PRAI
CMS1
DUF1529
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AKB05774
LinkDB
All DBs
Position
1411469..1412851
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AA seq
460 aa
AA seq
DB search
MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL
GVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL
EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEEIIAAAPAERQ
TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH
HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT
DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE
YMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGK
INLFPMRAYVAVHKKIAHKALNKIANGKMKGRQFRARLLK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgccaactcttttgctgctttgaatctgaagcctgaacttcttgctaaccttgaa
accatggggtttgccactatgactccgattcaggcgcaatctcttcctgcgatccttaaa
gggcaggatgtgattggccaaggcaaaacaggctccggtaaaaccgctgcgtttggtctt
ggggtactctccaacctcaatgtgaagcgctttcgtgtgcaagccttggtgctgtgtcca
acacgtgagttggccgatcaagtcgcgaccgatattcgtacgctagggcgtgctatccac
aatatcaaagtgttgacgctgtgtggcggtatgccaatggggccgcagatcggatccctt
gagcatggcgcgcatatcttggttggaacgccgggacggattttggatcatttgagtaaa
gatcgtatcgatctcagtgagctcaataccttggtgttggatgaagcggatcgcatgctc
gaaatgggtttccaagaagcgctagaggagatcattgctgccgcgccagccgagcgtcaa
accttgctatttagtgcaacttatcccgctagcattgagcagattgcgcaaagtgtgact
cgtaatgcgctgatgattaaagtcgaagcgacacacgatacttcaagcattcgtcaatat
ttctacaaagtagaaggcagtgctgcgcgtgatgaggctctggaaacgttgctcttgcac
catcaaccgacttcttcggtggtgttctgtaacaccaaacgtgaagtacaaaatgttgcc
gatgccctgcatcaaagcggttttagcgtgattgaactgcatggtgatatggagcagcgt
gagcgcgaccaagccttagtgcaatttgccaataagagtatttctattttggtggcgacc
gatgttgcggctcgtggtctggatgtcgataaccttgatgcagtgtttaactacgatctg
tctcgcgatcctgaagtgcatgtacatcgcatcgggcgtactggtcgtgcgggaagtaaa
ggcttagcgtttagcttctttagtgacaacgagagctaccgtgtggcgcaaattgatgag
tacatggatatcgcgattgaaccttcaaccttgccgcaacctgctgcaggcgctcgtcct
tacgcggcgaatatggtcaccattcagattgacggtggtaagaaagataaggtgcgtccc
ggtgatattcttggcgcactgaccagtgatggcgaactgaccgcggagcatatcggcaag
attaacctgttcccgatgcgtgcttatgtggccgtgcacaagaaaatcgcccacaaagcg
ctgaataaaattgccaatggtaagatgaagggacgccagttccgcgctcgcttactcaaa
taa
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