Vibrio cholerae O27 10432-62: VAB027_2081
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Entry
VAB027_2081 CDS
T03829
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vcz
Vibrio cholerae O27 10432-62
Pathway
vcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAB027_2081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcz03019
]
VAB027_2081
Enzymes [BR:
vcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VAB027_2081
Messenger RNA biogenesis [BR:
vcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAB027_2081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
AAA_19
Cas3-like_C_2
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKB07412
LinkDB
All DBs
Position
2238892..2240085
Genome browser
AA seq
397 aa
AA seq
DB search
MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL
EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVDQYGKDTGLKSLAVFGGVDEQAQKQRL
IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ
FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE
QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT
GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES
RLGHLIERRVVEGFEPKKPVPISILNYVPKHKRAVQD
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctcaacttggattaagtgacgttctggtacaaaccgtagcgcaacttggt
taccaaaaaccgacccatattcaaacccaagcgattccagtgattttgcagggacgtgat
ctgattgccgctgcgcaaacaggcacgggtaaaaccgccagtttcgtcctgcctattttg
gaaaaactgcgccaagggcaaacgcaacgtaaaaaacgtgtccgcgccttgattttagtg
ccaacccgcgagcttgcgatgcaagtggcggaaaaagtagatcaatacggtaaagacacg
ggcttaaagagccttgcggtgtttggtggcgtcgatgaacaagcacagaagcagcgcttg
attgatggcgtggatgtgctggtggccacaccggggcgtttgatggatctctatgggcaa
cgcgccgtctatttcgaagagatagaaatggtggtactcgacgaagccgaccgcatgctg
gatatgggttttattgagtcgatcaacaaaatcattgactgcctgccgagtgaagtacag
tttctgcttttttccgcgacactgtcacgtaaagtgcgtgagttagcgaaaaccgcagta
cgcgatccgcatgaaatcagtattgccgccaaccaagcctcaaaaagcaatattagccaa
tggctgatcaccgtcgataaagacaccaaatccgcattgttgagccacttaatcaatgag
cagcagtgggatcaggcattgatttttattgaaaccaaacatggtgcagccaagctcgtt
tctcaacttgaaaagcggggcatccatgcggaagcgtttcatagtggccgtagccaagcc
attcgcgcccaactacttgaagattttaagtcaggaaaaatcaaatacttggtcgcaaca
ggtgtcgcagcacgcggcattgatattgaccagctatcgcgtgtagtgaactacgatttg
cccttcccagccgatgaatatgtccaccgaatcggtcgaacagggcgcgcagaggctgtc
ggcgaagccatttcgtttgtctcaaaagacaacttcaaaaatctgtgcatgattgaaagc
cgcttaggccatttgattgagcgtcgcgtggtagaaggctttgagccgaaaaagcccgtg
ccgatttcgattttgaactatgtgcccaaacataagcgtgcggtgcaagattaa
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