Vibrio cholerae O27 10432-62: VAB027_2886
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Entry
VAB027_2886 CDS
T03829
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vcz
Vibrio cholerae O27 10432-62
Pathway
vcz03030
DNA replication
vcz03430
Mismatch repair
vcz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAB027_2886 (dnaE)
03430 Mismatch repair
VAB027_2886 (dnaE)
03440 Homologous recombination
VAB027_2886 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcz03032
]
VAB027_2886 (dnaE)
03400 DNA repair and recombination proteins [BR:
vcz03400
]
VAB027_2886 (dnaE)
Enzymes [BR:
vcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VAB027_2886 (dnaE)
DNA replication proteins [BR:
vcz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VAB027_2886 (dnaE)
DNA repair and recombination proteins [BR:
vcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VAB027_2886 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AKB07695
LinkDB
All DBs
Position
complement(3122680..3126159)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC
GVKPIIGADFILQSEEFGDELTKLSLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW
LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES
YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL
RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL
EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA
LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL
QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG
VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA
SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY
LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA
RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT
LLDELKQLLGHEQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacccaaagttcatccacttacgtatacacagtgatttctctatggtggatggt
ttgtccaaagtcccgccattggtgaaaaaagtggcggcaatgggcatgcccgcaatggcc
ttgaccgatttcaccaacctgtgtggcttggtgaagttttacagcaccgcgcataactgc
ggggttaagccgatcattggtgccgactttattttgcaatcggaagagttcggtgatgag
ctgaccaaactgagcttgcttgctaaaaataatgtcggttacaagaacctcaccttattg
atttctaaagcctatttacgcggccatgtccagcatcaacctgtgattgataaagcgtgg
ttggtcgagcatgccgaagggctgattgtgctctcgggaggcaaaagtggcgaagtgggg
cgcgcattactcaaaggcaaccaacaacaagtagaacgatgcattgagttttaccaaact
cactttgccgatcatttctatctagagcttatccgcactggccgtgccgatgaagagagc
tacttacattttgcgctggatgtggcagagcagtacgacttgcccgtcgtggcaaccaac
gaagtggtatttatcactgaagagtcgtttgaagcccacgaaatccgagtcgcgattcac
gatggttatacgctggaagatccacgccgtccgaaaaattacagtccgaagcagtatctg
cgcagcgaagcggagatgtgtgagctgtttgcggacattccagaagcgttagccaacagt
gtcgagattgccaaacgttgtaacgtgaccgtacgtttgggcgaatatttcctacctaac
ttcccaacgggcgggatggcgattgaagatttcctagtgatgaaatctcgcgaagggttg
gaagagagactcgaatttcttttcccagatccagaagttcgtgccaagcgtcgtcctgaa
tacgatgagcgtttgcaagttgagctcgatgtgattaaccagatgggctttcccggatac
ttcttgatcgtgatggagtttatccagtggtcaaaagataacgatattccagtcggtccg
ggacggggctcgggtgcgggctcattggtagcgtatgcactgaaaatcaccgaccttgat
ccgctggaatacgatctgctgttcgagcgtttcttgaacccagagcgggtctccatgccc
gacttcgacgtcgatttctgtatggataagcgtgaccaagtaattgatcacgtagcggaa
atgtatggtcgtgatgcggtatcacaaatcatcactttcggtaccatggcggcgaaagcg
gttattcgcgatgtggggcgtgtgcttggtcatccgttcggttttgtcgatcgcatttca
aaattagtaccacccgatccgggcatgacgctcgagaaagcctttatcgccgagcctgca
ctgcaagagctgtatgacgcggacgaagaggtcaaagagttgatcgacaagtgtcgcatt
ctggaaggttgtacccgtaacgctggtaaacacgctgggggcgtggtgatttcacccact
gccatcactgactttgcgccgatttactgtgatgcagaaggcaacttccctgtgactcag
ttcgataagaacgatgtggaaaccgccggtctggtcaaatttgacttcttggggctgcgt
acgctcaccattattgactgggctttgggcttagtgaacccgcgattgaaaaaggcgggc
aaacctcccgtgcggattgaagcgatcccgctcgacgatgcgcgctctttccgtaacctg
caagatgccaaaaccaccgcggtattccagctcgaatcgcgcggcatgaaagagctgatt
aagcgactgcaacccgactgttttgaagacatcatcgctctggtggcgctgtttcgtcct
gggccgttgcaatcgggcatggtggataactttatcgaccgtaagcatggccgagaagcc
atctcttatccggatgaaaagtggcaacatgaatcactcaaagagatcctagaaccgacc
tacggcatcatcctctatcaggaacaggtaatgcagatcgcgcaggtgctgtcgggttac
accttgggtggggcagacatgctgcgccgtgcaatgggtaagaaaaagccagaagagatg
gctaagcagcgcgccgtgttccaagaaggggcggagaaaaatggcgttgatggtgagttg
gcgatgaaaatcttcgatctggtggaaaaattcgccggatacggatttaacaaatcgcac
tctgccgcttatgcgctggtttcctaccaaaccttatggttgaaaacccactatccagcc
gagtttatggcggcggtaatgaccgcggatatggacaacacggaaaaagtggttggccta
gtggatgagtgtaaaaacatgggattgaccgtgttgccaccggacattaactcgggtctt
tatcgctttaacgtcgatgacaacggcgcgattgtttatggtattggcgcaattaaaggg
gtgggtgaaggtccgattgaagcgattttggaagcgcgcaacaaagggggatatttcaaa
gatctgtttgatttctgcgcgcggattgatctgaaaaaggtcaacaaacgggtaattgaa
aaactgatcttggctggcgccctggatagattaggcccgcatcgcgcagccatgatggcc
tcagtggatgatgcggtgcgtgcagcaagccaacatcaccaagcggaagcgtttggacaa
gcggatatgttcggtgtgctcacggatgcgccagaagaagtcgagcagaaatacacgcaa
gtgccagaatggccagaaaaagtgcgtttggaaggggagcgcgagacgcttgggctctat
ctcaccggccatccggtggatgaatacctgaaagagctcaccaaatacaccagttgccgt
ttgaatgaagccgcgccaacccggcgtgatcaatccttaaccgttgccggattggtgatt
gcagcgcgggtgatgaccaccaaacgtggcacgcgaattggtttaatgactttggatgac
cgctcgggccgtatggaagtgatgctttactcggaagcactcgatcggtatgcagaatgg
ttagaaaaagataaaattctggtggtttccggacaggtcagctttgatgacttcaatggc
ggacttaaaatgtcggcgcgcgaggtcatggacttgggcagcgcgcgtgaaaaatttgcc
cgcggtttatcgatctcgattttacagtcgcagattgatcaacaattttttgagcgtttt
agtcacatactggaacctcaccgcgcaggaaccgtacctgtcaatgtatactaccagcgc
cctgatgcgcgagcgcgcctgacgttaggcacagagtggcgagtcacgccaagcgataca
ttgttagacgaattaaagcagctacttggtcatgagcaggtagaactcgaatttaactaa
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