Vibrio cholerae O27 10432-62: VAB027_2954
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Entry
VAB027_2954 CDS
T03829
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vcz
Vibrio cholerae O27 10432-62
Pathway
vcz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VAB027_2954 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcz03400
]
VAB027_2954 (recB)
Enzymes [BR:
vcz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VAB027_2954 (recB)
DNA repair and recombination proteins [BR:
vcz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VAB027_2954 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_11
WHD_ORC2
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AKB08383
LinkDB
All DBs
Position
complement(3193562..3197188)
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AA seq
1208 aa
AA seq
DB search
MSADSNKLAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLS
VDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASEDPLLRSLLAEFTDHSLAVSLLL
NAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPL
PISLANEVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARISEIKQHW
LAEREEIEPAVTGSDLHKNSQNALLRRLPILDAWAQSETQDLQVPSELEEFTQSGLLAKS
KKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS
AALDNDEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAI
YAFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSYDIPFQPV
AASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASG
AAIFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERL
LLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLP
MLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA
QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDVESATT
WVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSA
MGFLLQDGQESGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQ
AIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNF
PRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQHLVDTVLSTP
LDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGML
KGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFL
RSRLAHYNYEQHFGGVFYLFLRGMDGRTDQGVFHTKPSLALLDELDGLIAGRELAQRASK
AGQMELDL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgattcaaataagctggctgttacgctcgatacgttgcgctttcctttgcat
ggagcgcggctgattgaagcctcggcaggtaccggaaaaacctacaccattgccggactc
tatctgcgtctggtgcttgggcatggttgcgcggaaactcgccacgcgcatccactgagt
gtggatcaaattctggtggtgacttttaccgaagcggccaccgcagagctgcgtgaccgt
attcgtcgccgcttacacgatgcgcgcctcgcctttgcccgcggtgcgagtgaagatccg
ctgcttcgctccctgctggctgaatttaccgatcacagcctagccgtctctttgctactc
aatgccgagcggcagatggatgaagcggccatttttaccatccacggtttttgccaacgc
atgctgacgcaaaatgcgtttgaatcgggcagtcgctttgaaaatgaattcgtcaccgat
gaaagtcgcctcaaagcgcaagtggtggccgattattggcgtagacagttctatcccttg
cccatttctctcgcgaacgaagtacgccgcttatggccggcgccttctgcgctgttggct
gagattgccggttatctttctgggccgccagtcaaactgaccacgcctttaatggaagga
gatttggccgcgctgcaacaagcgcagatagcgcgcattagcgagattaagcagcactgg
ttagcggagcgagaggagattgagcctgccgtaactggctctgacctgcacaaaaatagc
caaaatgcgctgctgcgccgtttaccgattctggatgcttgggcgcaaagtgaaacgcaa
gatctgcaagtgccgtcagagcttgaagagttcacccaaagcggattgcttgccaaatca
aagaaaggcaatccgccacaattagcgctgtttgaacgaatagaagcatttcttgctgag
cctgtgtcactcaaaacaccgcttttggtgcatgcgattcatcactgtcgtcactggttg
gcgaaagccaaatccacccatcattggctctcgtttgatgacttactgactcaactcagc
gctgcgctcgataatgatgagcaagggctattgggcgagcggatccgctcgctgtatccg
gtggcgatgatcgacgaattccaagataccgatccgctgcagtacagcattttcagtcgg
ctgtatctggactatccgcagtgtggcttgttgatgatcggcgacccgaaacaggcgatt
tacgccttccgtggcgccgatattttcacttacatcaaagcgcgcaatcaggtgagcgct
cactacaccttgggtacgaactggcgctccagcgcggcgatggtggcggcagttaaccaa
gtgtttagctctgcgactcatccgtttatttacagttatgacattccctttcagcccgtg
gcggcaagccctggtgctgataaacgccattggtcactggaggggcaagtacaacccgcc
ttgacttattggtggccggaagatctcgataaaccacaaagcaaaaccgattactacgcg
caaatggcggaggcgtgtgcggcgcaaattcagcacattttgactgcttcggcctctggc
gcggcaatctttcatcgcggcgaggcgattgaagcgggcgatctggcggtgctggtgcgt
acaggtaatgaagcgcgcatggtgcgtgatgcgctcagtcagcagggcatagccagtgtt
tacctttccaaccgtgacagcgtgtttgccagtgatgtggcacaagatattgaacgcttg
ctgcttgccgtgtggcagccagaagatgagcgcttgctccgtgcggctgtcgcctcgaat
ttgtttgcgttaaccgccagcgagctggatgcgctgaataacgatgaaaacgaatgggaa
cagttgattgccgaatttcgtcaatatcgccgcttgtggagcgagcgcggcgtattgccg
atgctgcgtgcagtattaactcagcgccacattgccgagcgttggctggcggaaagtgaa
ggtgagcgctggctcaccgactatctgcacatcagcgaactcttgcagcaggccacgcgt
gagatcgatagtgatcagggtttactgcgttttctgactcaggcgatggcggatgctgcg
caagggctcggtggcagtgatgagcagatccagcgtctcgaatccgagcggcgtctggtg
cagattgtcaccatccacaaatcaaaagggcttgagtacccgctggtgtttttgccgttt
gtgatgagctatcgcgagagcagcgaaggcaaatattacgacgttgaatcggccaccact
tgggtcgatttaaccggcaatgaagaggcgttagccaaagccgatcaagaacgtttggca
gaagatttacgcttgctgtatgtggcgctcactcgcgcagtgtatggctgttttattggg
attgcgccgctgcgcaacggcaattcgagccaagagccaacctcagcgcatcgcagtgcg
atggggtttctgctgcaagatggtcaagagagtggtatcgcggatctgcagcaagcgctg
cttaaacagtgtgaaaacttgccagatgtcgtgcaatgcccgccaccgaagcgtttcgaa
caagcgtatcagccaccccaattggacgagcgagagctgactgcccgtgagttaagccaa
gcgattgatcgccgctggcgagtgaccagttactcaggcttggtgatgcaatcaagtcat
gctcgccatgatcctttgcaagagttgcccttgcttgaagtaggcggttttgatcttgat
agtgcgcaagagcgtgatggagcggcgctggaatctgtcgagcgctcgattttcaatttc
ccgcgtggtgctcgccccggtacgttcttgcattcgctgtttgaagaggtggatttccag
caatcggcacacagtgaacccaatactaaaatcatccttgaactgatggaaagtgagcag
attgaaagcgagtggctgccggtgttgcaacacttggttgacaccgtattgagcacgcca
ctggatggtaaagcgctgcgcttacaacaaattatggccgcccagcgtctgaccgagttg
gagtttttattgccgatcgaagtgttggatgcgccaaccctgaatcgcatcacccagcgt
cacgatccgctttcggcacacgcgggcgatctcggttttcatgcggtgcaaggcatgctc
aaaggctttatcgatctggtgtttcaatatcaagggcgctattacgtgctggactggaaa
tccaaccatttaggtgacgatccagcggcatatcatccacagcgtttgggcagtgcgatg
gccgatcaccgttacgatctgcaataccaaatttacgcgttagcgctgcatcgctttttg
cgcagccgtttagcccattacaattacgagcagcatttcggcggcgtgttttatctcttc
ttacgtgggatggatgggcgcaccgatcaaggcgtgttccataccaagccaagcttggcc
ttgctagatgagttagatggattgattgcagggcgtgaattggcacaaagagcgagtaaa
gctgggcagatggagcttgatttatga
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