Vibrio cholerae O27 10432-62: VAB027_3679
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Entry
VAB027_3679 CDS
T03829
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vcz
Vibrio cholerae O27 10432-62
Pathway
vcz03420
Nucleotide excision repair
vcz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VAB027_3679 (uvrD)
03430 Mismatch repair
VAB027_3679 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcz03400
]
VAB027_3679 (uvrD)
Enzymes [BR:
vcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAB027_3679 (uvrD)
DNA repair and recombination proteins [BR:
vcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAB027_3679 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
VAB027_3679 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Speriolin_C
Motif
Other DBs
NCBI-ProteinID:
AKB06908
LinkDB
All DBs
Position
complement(3989997..3992168)
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AA seq
723 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMA
VTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQ
QRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPAHINAFDPVTQTYLKLYTAYQEA
CDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ
SNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN
SERMGKQLWTEGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQS
RVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGD
KTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVL
TDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAAL
EAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFS
QTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARL
EKV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgattgatccctctctattgctcgacggtctcaacgataaacaacgcgaagcggtggca
gcgccactggaaaacttactgattttggcgggagccggtagtggcaaaacccgcgtgctg
gtgcaccggattgcgtggctgatgtcggtggaagaagcctcgccgttttcggtgatggca
gtgacctttaccaacaaagccgcagccgaaatgcgtggccgaattgaagagctgatgcat
ggcaccgcttctggtatgtggtgtggcaccttccacggcatttgccaccgtattctgcgc
gcccattatctggacgctaagctgctggaagattttcaaatcatcgacagtgacgatcag
cagcgtctgctcaaacgcctcatcaaagcgcacaatctggatgataaacagtggccggca
cgccaagtcgcgtggtggatcaacaatcaaaaagatgaagggttgcgcccggcgcacatc
aacgcctttgatccggttactcaaacctatctcaagctgtacaccgcttaccaagaagcg
tgcgatcgcgcgggcttggtcgatttcgccgagattttgctgcgcgccctagagcttctg
cgtggtaatcagcacattcgcgagcattatcaggcgcgctttaagcatattttggtcgac
gaattccaagacaccaacgcgattcagtacgcgtggctgcgtatgatggcgggtgctcag
tcgaatgtgatgatcgtgggtgatgatgaccaatcgatatacggctggcgtggcgcgcga
gtggaaaacatcgaaaaatttacccgcgaatttccgagcgtgaataccattcgactggag
caaaactaccgctccaccaagaccattttggaagcctcaaacacactgatcgccaataac
agcgagcggatgggtaagcagttgtggactgagggcttggttggcgaacctatttcagtg
tactcggcgtataacgagctcgatgaagcgcgctttgtggtcagcaaaatcaaaggctgg
caggagcaaggcggcacactgaccgattgtgcgatcttgtatcgtaacaacgcccagtca
cgggtactggaagaggcgttattgcaagcgagtttggcctaccgcatttatggcgggatg
cgctttttcgagcgtcaagagatcaaagatgcgctgagttatctgcgtttgattaataac
cgtaatgacgacaccgcctttgagcgagtgattaatacgccgccgcgcggtttgggtgat
aaaaccctagagaccattcgctttgccgcgcgcgatcgtggctgcaccttgtgggatgcc
agtgtcggtctgctcaatgaccaagtgctcactgggcgtgctgcgagcgcgctgagccgc
tttgttgaactgatcaacgccttggaagaggaaggcatcgacatgccgctgcatgttctc
acggaccacgcggtaaaaacctctggtctgctggagatgtatcagcaggaaaaaggcgaa
aaatccaaagcgaggattgaaaacttggaagagctggtgacggcgacgcgccagtttgaa
aagccagaagaagcgcaggatatgactatgctgaccgcgtttttgacccatgcggcgctt
gaagcgggtgaaggtcaagccgatgagcatgatgatgcggtacaactgatgaccttgcac
agtgccaaaggattagagtttccgctggtgtttatggtcggtgtggaagagggcatgttc
ccgagccaaatgtctgccgaagaggcggggcgtctcgaagaggagcgtcgcctgtgttat
gtcggtatgacccgcgcgatgcaaaagctctacatcacctacgcggaaatgcgccgtttg
tacgggcaagataagtatcataagccatcacgctttattcgtgagctgccggaaggctgt
ttggatgaagtacgcatgaaggcgcaagtcagccgcccaaccagcacagggcgctttagc
caaaccgtagtcaaagaaagctttaacgaaaccggttttaatttgggctcacgagtccgt
cacccgaaatttggtgaaggcaccatcattaactttgaaggcagtggcccgcaaagccga
gtgcaagtggcgtttaatggcgaaggcattaagtggttagtgacggcttacgcaagactc
gagaaggtttag
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