Vibrio cholerae O27 10432-62: VAB027_638
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Entry
VAB027_638 CDS
T03829
Name
(GenBank) exonuclease SbcCD, C subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vcz
Vibrio cholerae O27 10432-62
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcz03400
]
VAB027_638
DNA repair and recombination proteins [BR:
vcz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VAB027_638
Archaeal homologous recombinant proteins
VAB027_638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Motif
Other DBs
NCBI-ProteinID:
AKB06419
LinkDB
All DBs
Position
complement(718607..721648)
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AA seq
1013 aa
AA seq
DB search
MRPLKLILQAFGPFAGREEIDFTKLGDAPLFLINGATGAGKSSILDAICYALYGETTGSE
RTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL
KADGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQLF
QTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHAQ
SQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQASHIETLRQQRQQAQKS
ARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVPKLNE
QRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQQASEKLEQELQNQRLEWEQQ
QRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQALLRFEQQHHHIQTQAEQAKL
TADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQD
WVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALLNELIEQQQILHSDIAALQQ
LNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSDLD
TLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVHAAHQAAIEAHRESQSHQEETTS
AWQQGLLHSGFSDESAYLAARLTDEAIGNIERQIAQYEERSAMLSGEQQALSRKLAEKNR
PELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGT
LSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGL
DLMVEDSYSGKWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLD
PESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGSTLRLIT
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgttaaaacttattctacaagctttcggcccttttgccggacgagaagagatt
gactttacgaagttgggtgatgctccactgtttttgatcaatggggcaaccggtgcagga
aaaagctcgattctggatgcgatttgctacgccttgtatggcgaaaccacaggcagtgag
cgtaccggcgaccaaatgcgctgcgattatgcggcccctgagtctctcaccgaagtgatt
tttgagtttgagctggcgggggcgcgttaccaaatcacccgtcagcccgatcaagagatc
ccgaaaaaacggggtgaagggatgacgaagaaatcccattccgctactttggttgcactg
aaagcggatggaaacgagctgattgccaacaagcccaatcctgtcgcgaaggcggtggtc
gaattgatgggacttgatgttaagcaatttcgccaagtcatggtgttgcctcaaggcaag
tttcgtgagcttttaaccgccaattcaaaagagcgtgagcagatttttggtcagctcttt
caaacccagctctacagccaaattgaacgggcgctgtttgaacgagcagcgggcattcgt
aaagagaaagaagagtttgatcagcagatcaaaggtacgttaagtgtcgtcggactggaa
agtgaagagcagttacaaaccgagttgaccgaactggctccagtattaacccatgcgcaa
tcacaactcaaagctgagcaacagcagtgggatgaaacaaaagcgcactatcaagctgcg
cttgagttagaacaacaatttatccgcaagcagcaattggtggtagaaatcgccactcac
caagagcaggcttcgcacatcgaaacgctgcgtcagcaacgccagcaagcccaaaaatca
gcgcgtttaaccgccgtccatcaacagtggcaccaagctcaaaaaaacctacagcaagcc
aaacttaaggttgagcagcagcagactctgttgcaacaggcgaaagctcagcagcaacag
gctcaacaggccagtcagcaagccagtttagcctgtgaagaagtacccaaattaaacgag
caacgcataacgtggcagcgtgctgagcaaaaattgctggcacaagaaaatgttcagcaa
gcggtggccaaggctgagcgtgaactgcaactagcgacacaaaatgcgcttaatttgcag
caagcgagcgaaaagctagagcaagagctacaaaaccaacgactcgaatgggaacagcaa
cagcgccaattaacgcgcttagaagttcaaaaagcgcgaatgaatcagttggtgcagcaa
gttcaggctcgcgagcgagaacaatcgttactgaatgaattacaaactgctcaacaagct
ttattgcgctttgagcagcaacatcatcacatccaaactcaggccgaacaagcgaaactg
accgcggataagctggagttcgcatggcatacccagagggctgcggagcttgctctcgca
ctcacacaaaatgaaccttgtccggtgtgcggcagtttagaacatcccaataaagctcaa
tattcgggtgacgttgtcaccaaggttcaggttgaacaagccagacagcagcaacaagat
tgggtgcagcgtcagcaagaggcattccatgcttggcaacaacaagggtttaaaaccgag
cagatagcgcaaaatctcacgactttatcgagtgagctaactttgcagcaagtggcgtta
ttgaacgagctcattgaacagcaacagatactgcacagtgacattgctgcgctacaacag
cttaaccctgatttgctgaaacggcagattgaagagggggagcagcggttagcgcacacc
aaaatgacgctcgaaaaacagaatcaaaaccagcaacaagcttggcagactttggctcag
ttacaggcggaattggcgagtttgcgccaagaaatcccaccggagctgtccgatcttgat
accttacgaagcgcgattgggcgtgtgcagaaccaaatagaaatcttacaaaaagcggaa
catacggctcgtgaacagtgggtgcaggcgcaaaagcagtttgccagtgtgcatgcggct
catcaggctgcgattgaagcgcaccgtgagtctcagagtcatcaggaggaaaccacaagc
gcatggcagcaagggttacttcattctggatttagcgatgagtccgcctatcttgccgct
cgtttaaccgatgaggctatcggcaatatcgagcgccaaatcgcccagtatgaagagcgc
agtgcgatgctcagtggcgaacagcaagccttatcacgtaaattagcagagaaaaatcgc
ccagagctggaaccacttcttgtcaaagtaactcaagctgaagaaaaaatggcactggcg
ttgcaggcgtttacgcaacatcaatcgcggatggatggtttgcaacgtgtcgccaagcaa
ctggcggatctgtaccagaaaaatcgtgcattagaagccgaatatcaggtcgtgggcacc
ttaagtgatattgcgaatggcaaaacgggcgctaaagtcagcttacatcgctttgtgctt
ggtgttttgctggatgatgtcttgttacaagcttctcaacgactgatgaaaatgagccga
ggccgctatttactcaaacgtaaagaggaacgcgctaaaggtaatgtgggctcagggctg
gatttgatggtcgaagatagctacagcggtaaatggcgtgatgtggccaccttgtccggt
ggtgaatcgttcatggccgccttatcgcttgcgcttggtttatccgatgtggttcaggct
tacagtggtggtatccgtcttgatactctgtttattgatgaaggttttggcagtttggat
ccggaatctttagatttagcgatccaaaccctaatcgatcttcagcaaggtggtcgaacg
atagggatcatctctcatgttaccgagctgaaagagcagatcggtctaagattggatgtg
ttggcgacaagaatgggtagcacgctgcgtttaatcacataa
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