Verticillium dahliae: VDAG_00471
Help
Entry
VDAG_00471 CDS
T03450
Name
(RefSeq) RNase3 domain-containing protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
vda
Verticillium dahliae
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vda03036
]
VDAG_00471
Chromosome and associated proteins [BR:
vda03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
VDAG_00471
microRNA pathway
RISC loading complex
VDAG_00471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DSRM_2
Helicase_C
ResIII
DEAD
DUF2192
PWI_Topors
YL1
Motif
Other DBs
NCBI-GeneID:
20701934
NCBI-ProteinID:
XP_009650143
UniProt:
G2WQ29
LinkDB
All DBs
Position
2
AA seq
1563 aa
AA seq
DB search
MTTDELSVGLDATGISILADGPENISSSTSTSTTGKEDGYLCINRFTQNTATTQDNQSRD
SDDDEDDCGSHDEADEDSDERQYSMTPERPHKITEKKRADHAAFHDWLQSNSSEIAQSTP
QPAQNLNHTSTALMVRESENRKIIENPREYQIELFERAKRKNIIAVLPTGSGKTLIAALL
LRHTLEQETADRRAGKPKRIAFFLVEKVALALQQHAVLECNLEFPIDRVCGDMVRSDWIK
ESWMKRWDDNMVMVCTAAILQQCLARSFIRMDQINLLVFDEAHHAKGNHPYARIIKDYYI
TEPDKERRPKIFGMTASPVDALTDVKIAAAQLEGLLHSEIATIEEDSVSFKQIQKEVVEQ
DCKYPALEPPFTTNLHKKIQEQVRYNKNFAKALSNSLEMSSSLGSWCVDRFWQIFLTEET
LARLAAQTAQDNIFADRAEKERVAIEEVRNIIKQHQFLPITKTLQDLSSKVLCLLGQLEL
RFSAPTDHKCIIFVEKRNTAMILAHLLSLPGIGPLYLKPAALVGNPSDNSPLAMSYKEQV
MTITKFRRGEYNCLLATSVAEEGIDIADCNIVIRFDLFNSVIQYIQSKGRARHLNSEYIC
MAELGNGKHTRAKIQANYDLSLIRQFCSTLPEDRKIVGWDPEAALHHGERDHKFHIVPST
GAKLTWTGSLVVLSNFASSLQVNDETLSPSYMVSLIGSEYICEVQLPSKSPILSVSGTLQ
KNKAEARCSAAFEMCMKLIKGGFISSHLQPTFTRKLPAMRNARLAISSKKRERYNMRVKP
EVWSRRGPASSLFLTVLKLRTPGALNRPSQPLALLTREALPELPGVPLFFGNCGRSIAEV
VSVAKPMHLDEVRLDSLRVFTLRIFKDVFSKVYDSQVADLPYFLAPAAHDHSHEFSPNED
PGSLIDWSHLLSTKEVEYLPWDEDHSPSFYQSKFVIDPYTGSRKLFLRGIRTDLKPTDLV
PDGVPEPTFRLWKDVEHTIKEYSISLWAKSRARRAGEWLDTQPVVEAELVSLRRNLLDEF
ADSKHEGSRVCYVILQPLQISTLPVEVVAMAYNFPAIIHRIESNMIALDACRMLNLRVRP
DLALEAMTKDSSNSEEHDQEKIDFQAGMGNNYERLEFLGDCFLKMATTIALFTRIPDSNE
FECHVERMLLICNQNLFNVALKKNLQEYIRSKQFDRRSWYPQGLKQKAGKAQGAQNSHSL
ADKSIADVCEAIIGASYLSYTDEGNFDMAVRAVTAVVRNKNHDMKSYEDYYKAFKMPIWQ
AAEPSAVQMEASLQIKEQMGYEFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLD
MVCVDFLFRKFPDADPQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFNSIMANQIKDYV
DALTHARQEAEAVAQISGTVSRDYWLNVKHPPKFLSDVVEAYIGAIFVDSGYDYGQVQAF
FEKHIRPFFADMALYDSFASSHPVTTLARMMQQDFGCQDWRLLVSELPPSCEDGGAAAIT
ETEVICGFMVHGRILLHAKSSSGRYAKVGAAKRAVEKLMGLGNDKEVFRTDFGCDCDCEG
QAI
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgacgagctctctgttggtctggacgccaccggcatctcaatcctcgcagat
ggaccggaaaacatatcgtccagcacatcaacatctacgactggaaaggaagatggatac
ctctgtatcaacagattcactcagaataccgccacgacccaggacaaccagagccgagat
tctgacgacgatgaggatgactgcggcagccacgatgaagctgacgaagattcagacgaa
agacagtacagcatgaccccagaaaggcctcataaaattaccgagaagaagcgcgcagat
catgctgcctttcacgactggcttcagagcaactccagcgagattgctcagtcaacccct
cagccggctcaaaacctcaaccacacctccacggccctgatggtacgcgagagtgagaat
cgtaagatcatcgaaaatcctcgggagtatcagattgagctcttcgagcgggcgaagcga
aagaacatcattgccgtgttacccactggatcaggaaagaccttaatcgcagcccttctt
ctgcgacacaccctcgaacaagaaaccgcggatcgacgcgcgggcaagcccaagagaatc
gcctttttcctcgtggaaaaggttgctcttgccctccaacagcacgcggttctggagtgc
aatctggaatttcccattgaccgggtatgcggtgacatggtacggtcggactggatcaag
gagtcatggatgaaaagatgggatgacaacatggtcatggtctgcaccgccgccatcctt
cagcaatgccttgccagatcattcatccgcatggatcagatcaacctgcttgtcttcgat
gaagcacatcacgccaagggaaatcatccgtacgcccggatcatcaaggactactacatt
acggaacctgacaaagaaaggcgccccaagatcttcggcatgactgcctctccggtggat
gccctcaccgacgtcaagattgctgccgctcaactcgaaggtttgttgcatagtgagatt
gcgacaatcgaggaggactctgtatcattcaaacaaatccagaaagaggtcgtcgaacaa
gactgcaagtaccctgccctcgaaccacccttcaccaccaatcttcataagaagatccaa
gaacaggtgcgctacaacaagaacttcgcaaaggcgctgagcaattctttagaaatgtcg
agctcccttggcagctggtgtgtcgatcgcttctggcagatatttctgaccgaagaaacc
ctcgcgagattggcagcgcaaactgcacaagacaacatttttgccgatcgcgccgaaaag
gagcgcgttgccattgaggaggtccgcaacatcatcaagcaacatcagttcctcccaatc
accaaaaccctgcaagacttgtcgtccaaagtgctgtgcctcctcggccaactggaattg
cgcttcagtgcccctaccgatcacaagtgcatcatcttcgtggagaaacgaaacacagcc
atgattctggctcacctcctctccttgcctggtattggacctctatatctgaaaccggct
gcgcttgtcgggaacccatctgacaacagccctcttgccatgtcgtacaaagagcaagtg
atgacaataacaaagttcagacgtggtgaatacaactgtcttctcgccacttctgtggcc
gaggagggcattgacatcgcagactgcaacattgtcattcgattcgatcttttcaactcg
gtgattcagtacatacaatccaaaggccgcgctcggcacttgaactcggagtatatttgc
atggccgagctaggcaacggcaagcatacaagggcgaagatacaagcaaattatgacctc
tccctcatccgccaattctgcagcacactgccagaagaccgcaagatcgtgggctgggac
cccgaggcagctcttcaccatggcgagcgcgaccataagttccacatcgttccatccacc
ggggccaaactcacctggaccggcagcctcgtggttctgtcaaattttgcctcttctcta
caggtgaacgacgaaacactaagtccttcctatatggtctctctcatcggtagcgagtac
atctgcgaggtccagcttccgagcaagtctcccattttgagcgtgtcaggcacgctccaa
aagaacaaagcagaggccaggtgctccgcagcgtttgagatgtgcatgaagctcatcaaa
ggtgggttcatcagcagtcaccttcagccgacgtttaccaggaagctcccggccatgcga
aacgcacgcctagccatcagctccaagaagcgtgaacggtacaatatgagggtcaagcca
gaggtatggtcacggcgtggaccggcatcctctctgttcctcacagtcctgaagcttcgt
acacctggtgcattgaacagaccatcacagccactcgccctcctcacacgagaggcactg
ccagagcttccaggagttccgctatttttcggtaactgtggtcggtccatagcggaggta
gtatctgtggcgaaacccatgcacttggatgaagtacgtctagacagcctcagagtattc
accctgcgcattttcaaagatgtcttcagcaaggtatacgattctcaagtcgcagacctt
ccatacttcctggcacctgctgctcatgaccacagtcatgagttctcaccgaatgaagac
ccagggtcactgatcgactggagccatctgctgtcgaccaaagaggttgagtacttgcct
tgggatgaagatcacagtcccagcttctatcaaagcaagtttgtgattgatccatacacg
ggatcgcgcaagctgtttctcagaggtattcggacagatctcaagccgaccgacttggtt
ccagatggagttcccgaacccacattcaggctctggaaggacgttgagcataccataaag
gaatacagcatcagcctctgggcaaagagtcgagcccggagagctggcgaatggttggac
actcaacccgtggtagaagccgagttggtctcgctgcgccggaatcttctcgacgaattt
gccgattccaagcatgaagggtctagggtctgttatgtgattctccagccgctacagatc
tcaacactccctgtcgaggtcgtcgctatggcctacaactttcccgccatcatccatcgg
attgaatcgaatatgatcgcccttgacgcctgccgtatgttgaaccttcgagttcgtccc
gacctggctctcgaggcgatgaccaaagattcaagcaacagtgaagagcacgatcaggaa
aagattgatttccaggccggcatgggcaataattatgagcgactcgagtttctcggagac
tgctttctcaaaatggcaaccaccatcgcactttttactcggatccctgacagcaacgag
tttgagtgtcacgtcgagcgaatgcttcttatttgcaaccagaatctgttcaatgtcgca
ttaaagaagaacttgcaagagtacattcgatcaaagcaattcgatcgacgcagttggtac
ccccagggtctgaagcagaaggcgggcaaagcccaaggagcacaaaactcacactcattg
gccgacaagtctattgctgatgtatgcgaggccatcattggcgcctcatatttgtcgtac
actgacgagggcaactttgacatggccgtacgcgctgtgacggccgtcgtgaggaacaaa
aatcacgacatgaaatcatacgaggactattacaaagcatttaagatgccgatctggcaa
gcggcggagccaagtgctgtgcagatggaagcgtctttacagattaaagagcagatggga
tatgagttcaagtctcctgccctgctgcggagtgccttcaagcacccgtcctacccccgt
cagtttgagagcgtgcccaattatcagcgcctcgagttcctcggtgacgcgcttctagac
atggtctgcgtagactttctcttcaggaagtttcccgacgccgatcctcaatggctcact
gaacacaagatggccatggtttcgaaccacttcctcggaagtctgagtgtagagttgggc
ttctaccggcgtgtccttcactttaacagcatcatggccaatcaaatcaaggactacgtc
gacgcacttactcatgcacgccaagaagccgaagcggtggcccagatctctggcacagtc
tcgcgagattactggctcaacgtgaagcacccccccaaattcctctcagacgtggtcgag
gcatacatcggtgctattttcgttgattcaggatacgattatggccaggtacaggcgttc
ttcgagaagcatatccggcctttcttcgcagacatggcgctatatgattcctttgccagc
agccaccctgtcacaacgctggcgcgtatgatgcagcaggactttggctgccaggactgg
cggcttcttgtaagtgaactgccgccgagctgcgaagacggcggggcagctgcgatcact
gagacggaagtgatttgtgggttcatggtccacggaagaatcctgctacatgccaagtcg
tcgagtggacggtacgccaaagtgggtgctgcaaagagagcggtcgagaagctcatgggt
ctcggcaacgacaaagaggtctttcggacggacttcggctgtgactgtgactgtgaaggt
caagcaatctag
DBGET
integrated database retrieval system
