Verticillium dahliae: VDAG_00613
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Entry
VDAG_00613 CDS
T03450
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
vda
Verticillium dahliae
Pathway
vda03013
Nucleocytoplasmic transport
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_00613
09122 Translation
03013 Nucleocytoplasmic transport
VDAG_00613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_00613
03041 Spliceosome [BR:
vda03041
]
VDAG_00613
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
VDAG_00613
Spliceosome [BR:
vda03041
]
Complex C
Other components
EJC/TREX
VDAG_00613
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
VDAG_00613
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
20702076
NCBI-ProteinID:
XP_009650285
UniProt:
G2WQH1
LinkDB
All DBs
Position
2
AA seq
2374 aa
AA seq
DB search
MAPAKRKRPDQSFDGNRPSPHRPADTAMGQRGRDGYDGGGGRGGRGGGRNGRRNDRRDST
QNQAGLGAPYNHQQHASSPTTSRHQTPRTSAAVPPPAPPVEQPPPAAPAPAPAATLPAPI
SSNYPYEILTDDKIASWDSGSRQALIEHGVQSRQDVDITELSSLFQEFVQSVAEYRLNPT
DAGACVKEILGPETKEVIKDSYSFEPHTLLLDTITIIMDNQPDLFIPEFRDFLIATAISP
TLIRQVLDAPLLQKLGLIREVFGKMAIRHSTNMLYRQANYNLLREESEGYSKLVTELFSC
VDDYDTPTTREAEAAFEKIKGLIGTFDLDVGRVLDVALDVHATSLVKASKFFVKLLRVSS
WWPRSNTPFDAIIQGGLPDWALPLPSELDESAIAEVRRQRDIGFWERAREKQIQAFFELG
GRRASEQDLERAAADNAGAATEGEAVRSWITATRTLPPQGNRVAAQLLGFKLRFYASDFR
EGQALPANLLYLAALLIKIGFISLIDLYAHLFQRESRGEASKNALLTAGALSDDTLPPPA
EGVDKKEEDEPHEQKGALVISLLTIGAIPEALFLIGRWPWLLQGYPDIISRVNRILEYSI
DKLYQETRPTTTSSMACPPKKVADSDQSGVAKGSVRRSEIPIRKSMRWPWPDGRLGVSDQ
HYRFYWDEWSDNVPVCQTVDDVFTLSSSLLNITGVNIGKSEQLLVMLASIGQKSLAEDQS
KHNLDRWQDLLRRILVPALSTSKGAPATANLVWTLLKQYPIATRYSIYADWFEGAPNRGS
EVRRAAMVKAFADTKSRAQGVMKRISKDNAVEMGRALAKLTHSSPGVVFKVALELMMSYG
NLSDVFAECVRFFTDLTKDVMIWSLLSALGSNQRSRTQASYILSISPWLLELSKLTGKLF
KRYRELDATPILRYVHDQLLHGNSTDLIILSELVDAMGGIVNTADIGYDEVIAMSGMALL
QRRTLISLQDRRFEPAVIASSKRLTHALVDSRLAGRLLVNIAQFRQSATFRLSDDGAHVK
YLSSLMDNSHQILVQYLDLLRANLDPAEFDRLVPSISQLMAEFGLDASFAFAIGRESLAA
HIFSKPTTAPKQISQSAPDAEGDVSMGDDATATESAPDTTKPETPAPEAPGEAHVTAATS
FDALNPIVESLRSTTPESAWKKISVEFFAIFWALQLGDLGVPWAPYHAQQARLQEQYRQV
TKDRKLLQAQRSAKQKELKDTMDTFIKESTQQSERVAKAKVLITKRMDTWFMGEPLKSNG
VSDAILEQCLLPRIILSKIDSEYSFALIKYIHELSCPNFRLMALYDRLFKANRLRGMLFT
CTVQEGVYLGHFFHLILRELNKWHKSSADYEKEAIGKSKRSGGYLGFATAFDEEGHPTSH
LDHAEFQDVLYGWHKNINLALKACLSGTEWTHIRNAISFLTEAHEDFPAVTFMGTQLQNQ
LKTIVAREKNLRGDLWLTAQRVLGNMAKMEKTWIAPQAFRTNLSTQSAAQGNEDEQASSS
GGNLRATAPEFRPSAQNEDGEVQDGKASFPQRSTSTRRDAKGTPQSNQRDSPRLPVSTPS
GPKPMHGALSHNRSSTPNPSETLPHAPGSSNRDPRQPNMPSNRNASSLPRGPGLPQRPPG
PIPEHQPLNRFTPAGPNDRRDVRDHRDPRAPRDNRDARESRDQRDARDSWEPKGGDVSRQ
ESSRESSRIERRGPDVSTRDSGRLSEGDRPPRRDHLQSGREAETPKERLPQSTSQGPDIG
RPGREAGTPAGGSTAAIEPPINPARAALFQSDTPSRTERPDRERSRARDGEQRGAQRHQG
SGGPEHDRSENMNVERPVLFGDGRQEPLPRQPREDPRERDRAPRKDSPARGGRVNPDRLS
SNPFRDAVRDEQFGRLPHPTDARNPRNPRDSRDPRDPRDHRTDDPRTSFQRGPERDGAFG
GSDSNPTREAFLSRAERDNGRPKQDDQYGRLNSNYPIASVVDAPSGPRGRGARPNPRNNF
NTPPPPPPRGDGRLPRTGSPGASAADDRHPPAGPSSGRGHRGQNASGSTPNSNAVTPSEG
PWQGPVDTPVPSSRPSDSATVAPGVHPDRLAQMGPPPSVSAGDAHSRQPTSTPDRPLTSG
QGSHQIPSGNFSGPAPDFATPTGPASGGGRKQGGRRQLEGINSTLQQAQGRPDPVKGTTI
RGRSSRTNLANSDAQILVGGSPASTSAYEEHQDPLQSSDKRPYEGEEHGRGEHERGRRER
DRSERSSRPSRRSSRERQRSPGGHERDSKDSRSHRDRRSGATGHGSSSRDEHEPRRSTRD
PSGSNPRESQTGALPPNNRDGASRDSRHRGDRGDMGPGGLVAEEWNGSASRHQRSGQRDS
VLRPPDDRRDPRDNSRKRRSEDANGFSVEKRQRR
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgctaagcgcaagcgacccgatcaatccttcgacggcaaccgaccctcgccc
caccgacctgctgataccgccatgggtcaacgcggccgagatggctatgatggtggtggt
ggaagaggtggccgtggtggcggcaggaacggcaggaggaacgatcgtcgcgactcgacg
cagaaccaggctggactaggcgctccctacaaccatcaacagcatgcctcttccccgacg
acctctcgccaccagacgccgcgaacatcagccgccgtccccccgcctgctcctcctgtg
gaacagccccctcctgccgcacctgcgccagcaccagcagcaactctcccggcaccgatt
tcatccaactacccctatgagattctcaccgatgacaagattgcgtcctgggacagcggt
tcgaggcaagctctcatcgaacacggcgtgcagtcaaggcaggatgtcgacatcaccgag
ctgtctagccttttccaggaattcgtgcagtcagttgccgaataccgcctcaaccctacc
gatgctggcgcctgtgtcaaagagatcctgggcccggaaacgaaggaggttattaaagat
tcttactcgttcgagccacacacgctcttgctggacacgataaccatcatcatggacaac
cagcccgacctttttatcccagagtttcgggacttcctcattgcgacggccatatcgccg
acgctcatccgccaagtgctggatgcccctcttcttcagaaactcggccttatccgggag
gtttttggcaagatggccattcgtcactctaccaacatgctttaccggcaggccaactac
aacctgctgagagaagagtcggaaggttactcaaaactggtgaccgagctattttcatgc
gttgatgactacgacacgcccacgacgagggaggccgaggctgctttcgagaagatcaag
gggcttattggaacctttgatctcgatgtcggcagagtgcttgacgtcgctctcgatgtt
cacgccacatcgctagtcaaagccagcaagttcttcgtcaagctcctgcgcgtcagttca
tggtggcctcggagcaacacgccttttgacgccatcattcagggtggtcttcccgactgg
gctcttcctctcccctccgaactggatgagtctgctattgccgaggtgaggcgtcaaaga
gacatcgggttttgggaaagagcacgggaaaagcagatccaggcctttttcgaacttggt
ggccgacgagcctcagagcaggatctcgagcgcgcggcagccgacaatgctggcgccgca
actgaaggcgaggctgtgagatcgtggatcacggccacccgcacgcttcctccccaaggg
aatcgtgtcgctgcacagcttttgggctttaaacttcgattttatgcgtccgatttcagg
gaaggtcaagctctccctgcgaacctgctttacttggccgctctgctcatcaaaattggc
ttcatttctctgatcgacctctacgcacatctcttccaacgcgaaagccgcggcgaggct
agcaagaatgctcttctaaccgctggcgcactctctgacgacaccctaccccctccagca
gaaggcgttgacaagaaggaagaggatgagccccatgagcaaaagggagccctggtcatc
agccttctgaccatcggggccatccccgaagctctcttcctgatcggccgctggccctgg
ttgctgcaaggctaccccgacatcataagccgagtgaaccggattttggagtattccatc
gacaaactttaccaagaaacccgacccaccacaacatcctccatggcgtgccccccgaag
aaggtggccgattcagaccagagcggcgtcgcgaaaggttcagtccggcgatccgaaatc
cccattcgaaaatctatgcgatggccatggccagatggccgcctcggcgtcagtgatcag
cactacaggttctactgggacgaatggtccgacaacgttccagtctgccaaacagtcgac
gacgtattcacgctttcttcgtcgcttctcaacattacaggcgtcaacattggcaaaagc
gagcagctccttgtcatgttggcgagtattggacagaagagcctggcagaggatcagtcg
aaacacaacctagaccggtggcaggacctcctccgccgtatcctggtccctgctctgagc
acgtcaaagggtgctcccgcaacagccaaccttgtctggactctgctgaaacagtaccct
attgctacccggtatagcatctacgcagactggttcgagggtgcccccaatcgaggctcg
gaagtacgtcgagccgccatggtcaaggcctttgccgacacgaagtctagggcacagggt
gtcatgaagcgtatctctaaggacaatgctgtggagatgggaagagccctcgcaaaactc
actcattcctctcccggcgttgttttcaaggtcgcactcgagctaatgatgtcttacggc
aatctgagcgacgtcttcgcggagtgtgtccgcttcttcaccgacttgaccaaggacgtg
atgatctggtcgctgctgtctgccctcggcagcaatcagcggagtcgtacacaggcatcc
tacatcctgtccatcagcccatggctgctggagctgtcgaagcttacgggcaagctcttc
aagcggtatcgagagctggacgcgacacccatccttcgctatgtgcatgaccagctgcta
catggaaactcaacggatttgatcattctctcggagttggtcgatgcaatgggcggtatc
gtcaacactgccgatatcggatacgacgaggtcatcgccatgtccggcatggccttgctt
cagcgacgaacattgatcagccttcaagatcgtcgctttgaaccagctgtcattgcgagc
tcgaaacgcctgacgcatgctcttgttgactctcgtctagctggacgcctgctcgttaac
attgcccagttcagacagtctgctactttcagactctcggacgatggcgcgcacgtcaaa
tacctttcgtcactcatggacaacagtcaccagatcctggttcagtatctcgatctcttg
cgcgcgaaccttgaccctgccgaatttgaccgactcgtgcccagcatcagccaactcatg
gcggaattcggtctcgacgctagcttcgccttcgccattggccgcgagagtcttgctgct
cacatcttttccaaaccaacaacagcgccaaaacaaatatcgcaatcagcgcccgatgct
gaaggcgatgtgtccatgggcgacgacgcgacagcgactgagtctgccccggacaccacg
aaacccgagacacccgctccggaagcgccaggggaagctcatgttaccgcggccactagt
tttgatgcactgaatcccattgtcgaatcccttcgctcaacaacaccagaaagcgcctgg
aaaaagatcagtgttgagttctttgccattttctgggcccttcagctcggcgatcttggg
gttccttgggcaccttaccatgctcagcaagctcgtctgcaagaacagtaccgacaagtc
acgaaagatcgcaagcttttgcaagcccagaggagtgcaaaacaaaaggaactgaaggac
accatggatactttcatcaaggaaagcacccaacagtccgagagagtcgccaaggcaaag
gtcctcatcaccaagcgtatggacacctggttcatgggtgagccgcttaaatctaacggt
gtttctgatgccatcctcgaacaatgtctccttcctcgcatcattctctccaagatcgat
tccgagtactcctttgccctcatcaagtacatccatgaactctcatgccctaacttccgt
ctcatggcgctgtacgaccgcctcttcaaggccaacaggctgcgcggcatgctctttact
tgcactgtgcaggagggcgtgtacctcggtcacttcttccacctcatactacgcgagctc
aacaaatggcacaagtccagcgccgactacgaaaaggaggccattggcaagagcaagagg
tccggtggctaccttgggtttgcgactgcattcgatgaagaaggtcacccgacatcccat
cttgaccacgcagagttccaggacgtgctatatgggtggcacaagaacatcaacttggcc
ctcaaggcctgtctttctggtaccgaatggactcacatccgcaacgccatttcattcttg
actgaggcccacgaggacttccccgcggtcacgttcatgggcacccagctccagaaccag
ctgaagactattgttgcacgcgaaaagaatctcagaggcgatctgtggcttactgcacag
cgcgtcctgggcaacatggctaagatggaaaagacttggattgcaccgcaagccttccgg
acaaacttgtccacgcaaagcgctgctcaaggtaatgaggacgagcaagcatccagctca
ggcggtaatctccgagccactgcaccagagtttcgaccctcagcccagaacgaagacggc
gaagtccaggatggcaaagcttcttttccgcagcgttcgacatcgactcgaagggatgcc
aaaggtactcctcagtccaatcagagggattctccccgactaccggtttccacgccgagt
ggcccgaagcccatgcatggcgcgttgtctcacaaccggtcatctacaccgaacccatcg
gagacgctgcctcatgctccgggttcatcgaacagggatccaagacaaccgaatatgcca
tcaaaccgaaacgcgtccagtcttccccgcggaccaggtcttccacagcgaccccctggc
cctatcccagaacaccagccgttgaatcgctttacaccagcaggacctaacgatcgccga
gatgtcagggaccatagagacccacgcgcgcccagagacaaccgagatgcccgcgaatcc
cgagaccaacgcgacgccagagattcctgggagcccaagggtggagacgtttctcgacaa
gaaagtagccgtgaaagctcaagaattgagcgccgcggcccagacgtatctacgagagat
agtggccggctgtccgaaggcgatcgaccccctcgccgcgaccatctccagagcggtcga
gaagccgaaacaccaaaggagaggttgccgcagagcaccagccaaggccctgatattggc
aggcctggtcgtgaggctggtacacccgccggtggctcgacggcagcaatcgagccgccc
atcaatcctgcgcgtgcagctttgtttcagagcgacaccccctcccgtaccgagcgaccc
gatcgtgaacgatctcgagcgcgggacggtgaacaacgaggagcgcagcgtcatcaaggg
tcgggagggccggagcacgatcgttcagaaaacatgaacgttgagcgtcccgtcctattc
ggcgatgggcgacaggagccattgccccgacaaccgcgcgaggatcctcgtgaacgagac
cgtgcaccgcgaaaagactcgcctgcacgaggtggtcgcgtcaaccccgaccgactttcc
tcaaatcccttcagagacgcggtccgggatgagcagttcggccgccttcctcatcctaca
gatgcccggaaccctaggaacccacgggactccagagaccccagagaccctagggatcac
agaacagacgatcccagaacttcattccaaagaggccccgagagggacggcgcatttggt
ggctcagacagcaaccccacgcgggaggccttcctttccagagccgaacgtgacaatggg
cggcccaagcaagatgaccaatacgggcgcctcaacagcaactatccgattgcctcagtc
gttgatgccccttcaggccctagagggcgaggcgcacgaccgaacccgaggaacaacttc
aacacaccgcctccaccgccgccccgcggtgatggtcgccttcctcgtaccggtagccct
ggcgcctctgctgctgatgatcgacaccctccggcgggaccgtcgtcaggccgaggacat
cgcggtcagaatgcctcgggttctacacccaactcgaacgcggtgacgccgtcagaggga
ccatggcaggggcctgtcgacactccggtcccctcatctcgaccctcggacagtgccaca
gttgctcccggcgtgcatcctgatcgtctggcgcagatgggtccaccgccatctgtgtcc
gctggggacgctcattcacgtcaacccacaagcaccccagatcggccgctgacttcgggt
caagggtcccatcaaatcccttctgggaacttcagcgggccggcccccgattttgcaaca
cccaccgggcccgcctcgggaggtggccgaaagcagggtggcagaagacagctagagggt
atcaacagcacactgcaacaggctcaaggcagacctgaccctgtcaagggcacgactatc
cgaggcaggagcagtcggactaatctggccaactctgatgctcagattctggtcggaggg
tcgccggcgtcgacgtcagcctacgaagagcaccaggatcctcttcagtcgtctgacaag
aggccctatgagggcgaagagcatggccggggcgagcacgagcgcggtcgtagggagcgc
gatcgctctgaacgatctagtcgaccatctaggagaagcagccgagagcgtcagcgtagc
cctggaggccacgagcgggatagtaaggacagtcgctcacaccgggaccgacgttcgggc
gctacaggccatggatcgtcctctcgagacgagcatgagcccagacgttctacgcgtgat
ccgagtggcagcaacccccgagagtcgcagacaggcgcgctgcctccgaacaatagggac
ggcgccagccgcgattcccgtcatcgaggcgatcggggtgacatgggaccaggaggtctc
gtagcggaggagtggaacgggagtgcctcgaggcaccaacggagcggacagagagactct
gtgctcagaccgccggacgatcgacgcgacccgcgggacaacagcaggaaacggagaagt
gaggatgcgaacgggttctcagtggaaaagaggcagaggcgttag
DBGET
integrated database retrieval system
