Verticillium dahliae: VDAG_00878
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Entry
VDAG_00878 CDS
T03450
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
vda
Verticillium dahliae
Pathway
vda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDAG_00878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_00878
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
VDAG_00878
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_16
TPR_1
TPR_2
TPR_22
TPR_CcmH_CycH
TPR_8
TPR_12
TPR_17
TPR_14
TPR_11
TPR_7
ARM_TT21_N
ARM_TT21_C
TPR_9
TPR_Slam
T7SS_EccA1_N
TPR_6
TPR_10
DUF3517
E_motif
Motif
Other DBs
NCBI-GeneID:
20702341
NCBI-ProteinID:
XP_009648059
UniProt:
G2WSV5
LinkDB
All DBs
Position
1
AA seq
1415 aa
AA seq
DB search
MSSKAQLKSIADSVKQSKWDDAVQKATDFLGNDPKNYQANLLLAFALDKKSKFDEAEKAY
KAAAALKPQDSQAWQGLIKLYEKQGPQKISGYKQAALSLAEIWRDADEMYKCQDVIDKFI
DYARAQGDRAQYVDALDLILPDNPIYPALEGRVAHPAKTYDTMAQIIETDEKKRINTLIG
ERRTRIGARVAEVTLEVKREVLGSSKLAHIYQQLIIWSSDDDVRRKYEEKLLQWWHTMLL
VSPPGPRKAEALQTVLRLSLDMVIIKHPFQLAWEIAINWKDGADIRDWDVNMLRDYCTFF
PETDLYKVITGYLTSSISPFPKPVPTDIEASETEDESEDDDGGGVSMVPLTDDDRLFMMI
DGIATADSIFAYRLMGEYYQHLEEHESIVELMRKAQKHLAAERIKTGVPFQHTGDAYALF
LGTALVFYQSPRHHTEAKSLFEGVLAHDPSSTAALIGIGLIYEEEEDYDDAVDFLERAVG
RDPSNLRIKTEAAWVKALKGDYELARAELEASLPLIEKKGQTYKELLALTQYRLGSCIWN
LDTSKAARKSRTGAYAYFLDALKNDLNLAPAYTSLGVYYADYAKDKKRARRCFQKAVELS
SSEVTAAERLARSFADEGDWDRVELVAQRVVDSGKVKPPPGSKRKGISWPFAALGVAELN
KQDYHKAIVSFQSALRVSPEDYHSWVGLGESYYSSGRYIAGMKATLNAHKVEESISADKL
GDTWFTKYMLANIKRELGEYDESIVLYREVLDGRAGEDGVAIALMQTLVESALDGIEKGF
FGKSVELALETISFAAKADDSVVKTFNYWKTLGDACSVFSAVQSRAADFPGEAVTTIIEK
GAGDAYALLADVDHVDATVVSAKGLFSEDERLGVDLTRCIHATILCHKRAIHESATDIHA
QAVAHYNLGWAEHRAHICLPSSIRKKSSVYLKASMRCFKRAIELEAGNSEFWNSLGVVTS
EISPAVAQHSFVRSVHLNERSPVAWANLGTLALLQNDVRLANEAFTRAQSTDPDYAHAWL
GQGFVALLLGEPKEARGLFTHAMEIAESSSALTRRQYSVAVFDHVLTTPLNFTISSLIQP
VFALSQLNTLKPQDLAYGHLSSLFRERTRDNAPAVAVLEKICGVLETDYELTESAQSLAR
FALARTDLARLYLAAGSYEQAIECGDLAIQLSSDESDNELSMDERKKARLSAHLTVGLAQ
YYSQDMDESLRCFEAALSESDNNPDAVCLLAQVLWAAGGEDSRERARSALFEVIEAHPDH
VPAVLLLGVIALLDDDDESVEAVVAELQGLRTSDKVQPSEHSQLGEVLSAIAALGADAAE
EEGREVVTQAQTDIMLYPHLPHGWSRLADAGGDDYAADTALRVALKAVPPRGTLEAADLA
RAYAGTGKAADAQIAIHLAPWARQGWTALRDAVSA
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaaagcccagctgaagtccatagcggactcggtgaaacagtccaagtgggac
gacgctgtacaaaaggccaccgactttctagggaacgatcccaagaattatcaagcaaac
ctgcttctcgcgtttgctctggacaagaagagcaagttcgatgaagccgaaaaagcctac
aaggcggcggcggctctcaaaccccaggacagccaggcatggcagggtctcatcaagctg
tacgagaagcagggaccgcaaaagatctcgggttacaagcaagcagctctcagcctcgcc
gagatttggcgtgatgccgacgagatgtacaagtgtcaagacgtgattgacaagttcatt
gactacgcacgagcacagggcgatcgcgcacaatacgtcgacgccctagacctcatcctg
ccggacaatcccatctaccctgccctcgaaggtcgcgttgcccaccctgccaagacctac
gacaccatggcgcagataattgagacggatgaaaagaaacgcatcaacacgctcattggg
gaaaggaggacaagaataggcgctcgcgttgccgaggtcacgctcgaggtcaagcgtgaa
gtgctcggtagcagcaagctcgctcacatataccaacagctcatcatctggagcagcgat
gacgatgttcgacgaaagtatgaggagaaacttctccagtggtggcacactatgcttctc
gtgtcgcctcctggaccacggaaagcagaggcgctgcaaacagttcttcggctttctctc
gacatggtcatcatcaagcaccctttccagctcgcttgggaaattgccatcaactggaaa
gacggggccgatatacgcgactgggacgttaacatgctgcgagactactgcaccttcttt
cccgagacggatctgtacaaggtcatcaccggatacctgacgagctccatctctcccttt
ccaaagcccgttccgacagacatagaagccagtgagactgaagacgagagcgaagacgac
gacggaggcggcgtgtcaatggtgccactgacggatgacgaccggcttttcatgatgatt
gacggcattgcgactgcagactcgatatttgcctaccgtctgatgggcgaatactaccag
cacctcgaagaacacgaaagcattgtcgagcttatgcgcaaggctcagaagcatcttgct
gccgagcgcatcaagactggcgtgccattccagcacacgggcgatgcgtatgcattgttc
ttgggaaccgcccttgtcttttaccaatctcctcgccaccatacggaagccaagtctcta
tttgagggtgtcctggcgcacgacccatcctcgacggctgcactgataggaatcggtctt
atctatgaggaggaggaagactacgacgatgccgtcgacttcttggagcgcgccgtgggc
cgggacccgagcaacttgcgcatcaagaccgaagcagcgtgggtgaaggcactcaaggga
gactacgaacttgcccgtgcggagcttgaagcgtcactgcccttgattgagaagaagggc
cagacttacaaggagctccttgctctgacgcagtaccgacttggttcgtgcatttggaac
ctcgacacgtccaaagcggcgcgtaagagtcggacaggagcctatgcctacttcttggac
gctctcaagaacgacctcaatttggcgcccgcgtataccagccttggtgtctactacgct
gattatgccaaggacaagaagcgggcaaggcggtgtttccaaaaagcagtcgagctgtca
tcgtccgaagtcaccgccgctgagcgtcttgcgcgttccttcgccgacgaaggtgattgg
gatcgcgtagagctcgttgctcagcgcgtggtcgactctggaaaggtcaagccgccgccc
ggatctaagcgaaagggtatcagctggccgtttgctgcactcggtgtcgcggagctcaac
aaacaggactatcacaaggccattgtgtctttccagtctgctctacgggtgtcgccagag
gactatcattcgtgggtcggcctcggcgaaagctactactcgtccggccggtacattgcc
ggcatgaaggcgacactgaacgcacataaggtggaggagtcgatctcagccgacaagctt
ggcgacacatggttcaccaagtacatgcttgctaacatcaagcgagagctaggagagtac
gatgagtctattgtcctgtaccgtgaggttctcgacggcagagctggcgaggacggagtg
gccattgcgctcatgcagacgctcgtagagagtgcgcttgatggtattgaaaagggcttc
ttcggcaagtcagtcgaactggcactggagaccatctcctttgcggccaaagctgatgac
agcgtcgtcaagacgttcaactactggaagaccctgggagatgcgtgctctgtcttttca
gctgtgcaaagccgagcggcagatttcccgggcgaggctgtcacgacaatcatcgaaaag
ggagccggggacgcctacgccctcttggccgacgtcgatcacgttgatgccactgttgtc
tcggcaaagggcctgttctccgaggatgagagactcggtgtcgacctgacgaggtgcatc
cacgcgacgatcctctgccacaagcgagctatccacgagtcggcgaccgacatacacgcg
caagccgtagcgcactacaacctgggctgggccgagcaccgagcccacatctgcctgccc
tctagcatcaggaagaagtcgagcgtctatctcaaggcttcgatgcgctgcttcaagcgg
gccattgagctcgaggccggcaactcggaattctggaactcgctgggtgtcgttacgagc
gaaatcagcccggccgttgcgcagcattccttcgtccgcagtgttcaccttaacgagagg
agccccgtggcgtgggccaaccttggaactctggccttactgcagaacgatgtcaggctc
gccaacgaagcattcacgcgggcccaatccacggatcccgactatgcacacgcgtggctg
ggccagggcttcgtcgctttgctgctcggggagccaaaggaagctcgcggcctgttcacg
cacgccatggaaattgcagagtcatcgtctgctctgacgcggcggcagtactccgtggcg
gtatttgaccacgttctcacgacgcctctcaactttaccatttcgtctctcatacagccc
gtgtttgcactgagccagctgaacacgctcaagccccaggatctcgcctatgggcacttg
tcgagcctcttcagagagcgaacgcgggacaacgcgcctgccgtcgccgtgctggaaaag
atctgcggcgtactggagacggactacgagctgaccgagtcggcccagtccctcgcgcgc
ttcgctctcgccaggacggatcttgctcggctgtacctggcggcaggctcctacgagcaa
gccattgaatgcggcgacctggcgatccagctcagcagcgacgagtcggacaacgaactc
agcatggacgagcgcaagaaggcgcggctctcggcccacctgacggtcggtctggcgcag
tactacagccaggacatggacgagtcgctgcgctgcttcgaggcggcgctcagcgagtcg
gacaacaaccccgacgccgtctgcctgctggcgcaggtgctgtgggccgccggcggcgag
gactcgcgcgagagggcgcggtcggcgctgttcgaagtcatcgaggcgcacccggaccac
gtgccggcggttctgctcctgggcgtcatcgccctgctcgacgacgacgacgagtcggtc
gaggccgtcgtcgccgagctgcagggtctccggaccagcgacaaggtgcagccgtcggag
cattcgcagctcggcgaggtgctgagcgccattgccgcgcttggcgccgacgccgctgag
gaggagggcagggaggtcgtgacccaggcgcagacagacattatgctgtaccctcacctg
ccgcacggatggtcgaggctcgcggacgccggcggcgacgactacgcagcggacacggcg
ttgcgggtggcgctgaaggcggtgccgccacgtgggacgctcgaggcggcggatttggcg
agggcgtacgccggcacgggcaaggcggcggatgcgcagattgccatccacctggcgccg
tgggcgcggcagggatggacggcgttgcgcgatgctgtttcggcgtga
DBGET
integrated database retrieval system
