Verticillium dahliae: VDAG_01330
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Entry
VDAG_01330 CDS
T03450
Name
(RefSeq) U3 small nucleolar RNA-associated protein
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
vda
Verticillium dahliae
Pathway
vda03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VDAG_01330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vda03009
]
VDAG_01330
Ribosome biogenesis [BR:
vda03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
VDAG_01330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Utp13
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
EIF3I
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR41
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_EIPR1
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_IP5PC_F
WD40_RFWD3
Beta-prop_VPS8
WDR54
Beta-prop_WDR19_1st
TFIIIC_delta
Motif
Other DBs
NCBI-GeneID:
20702793
NCBI-ProteinID:
XP_009648511
UniProt:
G2WU57
LinkDB
All DBs
Position
1
AA seq
822 aa
AA seq
DB search
MKIYALKSADDDSITPTLVRSLKPHGTPVVVLAVDRTSTLLATGGTDGAIKVWDIAGGYV
THTFRGPSVLVSALKFFEVAARAKESDTGKKSKKARHGDEEEEEEVKVGTTQFRLISGSQ
DGKVRVWDLHKRKTIASLDSHVSDVQGLDYSPEQDAIVTGSRDKTIIWWDARSWKIRKVV
PCLELIEAVGFVDEGKLTYSAGSNGCLRIWDTDTGREVTKDQPAKAETEGITTAIYRPEL
PFILCVQVDHTLALYQTPTKASTTDAAPEPFRRISGTHDEIIDLTYLLPDHSIMALGTNA
EEVRLVSVAGSESITGAHDWTAQGSRYFGQDVGLLKGHDDIVLTMDVDWSGHWIATGAKD
NSARLWRVDPANSSFTCYATFTGHAQSVGAVGLPKTIPAESSAQFKDPLSHPPPFLLTGS
QDMTIKKWEIPRQPQTKKGGSRALFTRKAHEKDINAIDVHPNGHLFATASQDKTVKIWSV
KEGEVQGILKGHRRGVWSVKFAPEHTPTIQGDEGPVAGKGVILTGSGDKTAKLWSLSSYT
CVRTFEGHSNSILKVAWLNVPRPEEKKRKQILFATAAGDGLVKVWDAQSGETECTLDNHI
DRVWALAVHPETNAIVSGSGDSTVCFWKDTSSETQEEATKAALQLIEQEQELENHIHAGS
YREAIILTLQLNHPGRLLSLFTSVVTSNKPDADSLCGSKAVDQVLATLSDEQIFLLLLRL
RDWNTNARTAPVAQRILSTLVKSYPASKLSNLSVKGARGQRSLKEVLNALKVYTERHYKR
MDELVDESYLVEYTLQEMDNLAPALDDLVLREAGDEKDVVMA
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttacgccctgaagtctgccgacgatgactccatcacaccgactctcgtccga
tccctgaagcctcatggcacccccgttgttgtgctggctgtcgaccgcacaagcaccctc
cttgcgactggtggcactgacggtgccatcaaggtctgggacattgctggaggatatgtc
actcacacattccgtgggccaagcgtcctcgtctctgctctgaagttcttcgaagtagcg
gcacgggccaaagagagtgacaccgggaagaagagcaagaaggcccgccacggcgatgag
gaagaggaggaggaagtgaaggttggcaccacgcaattccgcctgatctcgggtagccaa
gacggaaaagtccgggtctgggatctccacaagcgcaagacgatcgcaagcctagactcc
catgtctcggatgtgcagggtctcgattactcgccagaacaggatgccatcgttacagga
tccagggacaagaccattatctggtgggatgcgagatcctggaagattaggaaggtcgtt
ccttgtctggagctcatcgaagcagttggtttcgttgacgagggcaagctcacatactcg
gccggctccaatggctgtttgaggatctgggacactgacacaggtcgcgaagtgaccaag
gaccagcctgctaaggccgagacggagggcatcacgactgcaatctaccgaccagagctg
ccattcattctctgcgtgcaagttgaccacaccttggcactttaccaaacgcctacgaag
gcttcgacaacggatgctgctccggaacctttcagacgcatctcaggaacgcacgatgag
atcattgacctcacctacctgttgccagatcattctatcatggcactcggcaccaacgcc
gaggaggttcgcctagtatcagttgctggttctgagtcgatcactggcgcgcatgactgg
acagcacagggatcgcgatacttcggacaagatgtcggtctgctaaagggtcacgacgat
attgtcctgacaatggatgtcgactggtctggccactggatcgcgactggtgcaaaggat
aattctgctcggctctggcgtgtcgacccagccaacagttccttcacatgctacgctacc
ttcactggccacgcccagtccgttggtgctgtcggtctgccgaagaccatccccgccgag
tcatctgcgcagttcaaggatccgctcagccacccgccacccttcctcctgaccggctcc
caggatatgacgatcaaaaaatgggagatccctcgtcagcctcagaccaagaagggtgga
tcacgggccttattcactaggaaagcgcacgagaaggacatcaacgccattgatgtgcac
cccaatggtcatttgttcgctacagcatcacaggacaagactgtcaagatttggtcggtg
aaggagggcgaagtccaaggcattctcaagggccatcgccgaggtgtctggtctgtcaag
tttgcgcccgaacacacccccaccattcaaggtgacgagggcccggtagccggcaagggt
gtcattcttacgggcagcggtgacaagacggccaagctgtggagtctgtcgagctacacc
tgcgtcaggacgtttgaaggccactctaacagtattctgaaggtggcgtggctcaacgtg
cccaggcccgaggaaaagaagcgcaagcagatactcttcgcgactgcagccggtgatggc
cttgtcaaggtgtgggatgctcagtcgggagagacggaatgtacactggacaatcacatt
gacagggtatgggctctggcggtgcacccagagaccaacgccatcgtctctggcagtggt
gactctacagtctgtttctggaaagacacgagctctgagacgcaggaggaggccaccaag
gccgcgctgcaactcattgagcaggagcaggagcttgagaaccacatccatgccggctcc
taccgagaggccatcatcctgacgcttcagctcaaccatcccggccgactcctcagcctc
ttcacctctgttgtaacatcaaacaagcccgacgcggacagcctgtgcggctccaaggct
gtagaccaggtgctggcgaccctttccgacgaacagatcttcctgctcctgttgaggctg
cgcgactggaataccaacgccaggacggcacccgtcgcgcaaaggatcttgtcgacgctg
gtgaagagctacccggcatcgaagctctcgaacctgtctgtcaagggtgcgcgcggccag
aggagtctgaaggaggtcctgaatgcgctcaaggtatacactgagaggcattacaagagg
atggatgagcttgtggacgagagttatttggtggaatataccctgcaggagatggacaac
ctagcccctgctctggatgatctggttttgcgcgaggcgggtgacgagaaggatgtcgtc
atggcgtag
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integrated database retrieval system
