KEGG   Verticillium dahliae: VDAG_01364
Entry
VDAG_01364        CDS       T03450                                 
Name
(RefSeq) 3'-5' exoribonuclease CSL4
  KO
K07573  exosome complex component CSL4
Organism
vda  Verticillium dahliae
Pathway
vda03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDAG_01364
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_01364
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     VDAG_01364
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     VDAG_01364
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 20702827
NCBI-ProteinID: XP_009648545
UniProt: G2WU91
LinkDB
Position
1
AA seq 306 aa
MATDAIPQTAVPGTALGPASRYRSGAGTHIHEGIVVSSLLGRVTVDTPASANGPAKRLTR
IAGVLNSPADRATISVSRHGGKKREALPDVSNIVLCRVLRLMPRQAIVSIQQVGDTVLQT
EWQGVIRSQDVRATEKDKIKIHEAFKPGDIVKAQVISLGDQANYYLSTASNELGVIMATS
EAGNDMVPVSWKDVRRKGTREPTDRPGRFPSALPVVLARGMRPQSGQCLKHGSMSMTVVP
VRQLAARGAKSRGAPTKHGQKLALSSVKQVRHAKASENSDTTLAYAAGMAGGGRGLIDWT
YWPGPV
NT seq 921 nt   +upstreamnt  +downstreamnt
atggcaacggacgccattcctcagactgccgttcccggcaccgcactcggcccagcctct
cgctaccgctccggcgccggcactcacattcatgaaggcatcgtcgtctcctccctgctc
ggccgagtaaccgtcgacacacctgcctcagcaaacggcccggccaagcgcctgacgcgc
attgccggcgttctcaactcgccggcggaccgagcaacgatctcggtgtcgaggcatggt
ggcaagaagcgcgaggcactgcccgatgtcagcaacatcgtgctatgccgcgtgctgcgc
ctgatgcctcgacaggcgatagtgtcgattcagcaggttggcgacacggtgctgcagacg
gagtggcaaggggtcattcggtcgcaagacgtacgagcgacagagaaggacaaaatcaag
atccatgaagcgttcaagccaggcgacattgtgaaggcgcaggtgatctccttgggtgac
caggcgaattactacctgtcgacggcgagcaacgagctgggagtcatcatggcgacgagt
gaggctggcaacgacatggtgcctgtgagctggaaggatgtccgccggaagggcacccgc
gagccgactgatcgacctggcagatttccctcggccttgccggtcgtgttggcgagaggt
atgcgcccccagtcaggtcagtgtctgaaacacggcagcatgagcatgaccgtcgtacca
gtacgacaactcgcggcaagaggagcaaagagcaggggagctccgacaaagcacggccag
aagttggccttgtcatcggttaagcaagtccgccatgcgaaggcttcagaaaattcggat
accaccttggcatatgcagctggcatggcgggggggggaagggggttaattgactggaca
tattggcctgggcccgtttga

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