Verticillium dahliae: VDAG_01644
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Entry
VDAG_01644 CDS
T03450
Name
(RefSeq) pre-mRNA-splicing factor slt-11
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
vda
Verticillium dahliae
Pathway
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_01644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vda03041
]
VDAG_01644
Spliceosome [BR:
vda03041
]
Complex B
Other components
Prp19-related factors
VDAG_01644
Complex C
VDAG_01644
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
RRM_YTH1
RRM_occluded
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
20703107
NCBI-ProteinID:
XP_009655968
UniProt:
G2WVK8
LinkDB
All DBs
Position
7
AA seq
381 aa
AA seq
DB search
MPPQIKQDLNRSGWESTDFPSVCESCLPDNPYVKMLKEDYGAECKLCTRPFTVFSWSADS
AHGRKKRTNICLTCARLKNCCQTCMLDLSFGLPIVVRDAALKMVAPGPSSDINREYFAQN
NEQAIEEGRAGVEEYEKTDEKARELLRRLATSKPYFRKGKAIEGADAGGQGGSSRGGDPA
VGAGVGGAGPIRTGDSRAAAAAGAGPGGRAKQAFPSAAQLPPGPQDWMPPQDKNIMSLFV
TGVEDDLPEHKIRDFFKAHGKIKSLICSHMSHCAFVNYETREGAERAAAECKGRAVIAGC
PLRVRWGVPKAIGTMDKEQRGHMLRDGRQIQGGARKAGQQGGQKQLTGGGGADEGESSHG
AVAAPPPGADDGPQYASLAGE
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctcagatcaaacaggacctcaaccgctctggttgggagtctactgactttccg
tccgtatgcgaaagctgccttcccgacaacccatatgttaagatgctgaaggaagactac
ggcgccgagtgcaaactttgtacgcgaccctttaccgtcttcagctggagcgccgacagc
gcccacggtcgcaaaaagaggacgaacatctgcttgacgtgcgcacgactcaagaactgc
tgtcagacatgcatgctcgatctctccttcggcctaccaatcgtcgttcgagacgctgcc
ctgaaaatggtggcacccggtccctcctccgacatcaacagggagtactttgcgcaaaat
aacgagcaagcaatcgaagagggccgcgctggcgtcgaagagtatgagaagactgacgaa
aaggcgcgcgagctcttgcgccgactagcgacaagtaagccgtacttcaggaaaggcaag
gccatcgagggtgcggacgcggggggccaaggggggtcatctagagggggagaccctgcg
gtaggtgccggcgtgggcggtgctggtccgattcgcaccggggactcgagagccgcggct
gcggcaggcgccgggcctggaggcagagcgaaacaggcgtttcccagtgctgcgcagctg
cctcccggccctcaggactggatgccacctcaagataagaacatcatgtcgctctttgtc
acgggtgtcgaggacgacctgccagaacacaagatcagggacttcttcaaggcccatggc
aagatcaagagtttgatctgctcacacatgtcgcattgcgcctttgtcaactacgaaacg
cgcgaaggtgccgagagggctgcagcagagtgtaaggggcgcgccgtcattgcaggttgt
ccgctcagggtccgttggggtgtgcccaaggccatcggtaccatggacaaggagcagcgc
ggacatatgctcagggatggtcgccagatacagggaggggcgagaaaagcagggcagcag
ggtggccagaagcagcttacgggcggcggaggcgcagacgagggcgagagcagccacggc
gcagtcgcggcgcctcctcccggagccgacgacgggccccagtatgccagtctggcgggc
gagtga
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