KEGG   Verticillium dahliae: VDAG_01780
Entry
VDAG_01780        CDS       T03450                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
vda  Verticillium dahliae
Pathway
vda03013  Nucleocytoplasmic transport
vda03015  mRNA surveillance pathway
vda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDAG_01780
  09122 Translation
   03013 Nucleocytoplasmic transport
    VDAG_01780
   03015 mRNA surveillance pathway
    VDAG_01780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_01780
   03041 Spliceosome [BR:vda03041]
    VDAG_01780
Enzymes [BR:vda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VDAG_01780
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     VDAG_01780
Spliceosome [BR:vda03041]
 Complex C
  Other components
   EJC/TREX
    VDAG_01780
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    VDAG_01780
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 DUF4844 CMS1 Dark_CARD
Other DBs
NCBI-GeneID: 20703243
NCBI-ProteinID: XP_009656104
UniProt: G2WVZ4
LinkDB
Position
7
AA seq 513 aa
MSGQQEEDLIDYSDEELQTNETAAASNGKKGAADAAATGNSVDKKGSYVGIHATGFRDFL
LKPELLRAIGDCGFEHPSEVYGSGLVRFFPESMVVIVAALGTEAAHVVSVTPRAQTPVRA
VSCQTKSPASRVESSRRTRHADSHAGLSQVGCAEAANVLCDLALLGGDIICQAKSGLGKT
AVFVLTTLQQVEPVAGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQK
DVETIKNKDTCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQEI
FRATPTQKQVMMFSATLSDEVKPICKKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREK
NRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFK
DFNKRICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGRAGRFGTKGLAISFVSTD
GDKEVLAAIEKRFEVALPEFPKDGVDPATYMAS
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtccggccagcaggaagaggacctcatcgactactccgatgaggagctccagacaaac
gagacggccgccgcctccaacggcaagaagggcgctgccgatgccgctgccactggtaac
agtgtcgacaagaagggcagctacgtcggcattcacgccaccggtttccgcgactttctg
ctgaagcccgaacttcttcgtgccatcggtgattgcggcttcgagcatccctcggaggta
tatggaagtggcctcgtccgtttctttccagagagcatggtcgtcatcgtcgccgccttg
gggactgaggcggcccacgtcgtctctgtgaccccaagggcgcagacacctgttagggct
gtttcttgccagacaaagtctcccgcatcgcgcgtcgagagctcgagaagaacccgccac
gccgactcgcacgccggcctcagtcaggtcggatgtgcagaggcggcgaacgtcctgtgc
gacttggccctcctcggtggtgacatcatctgccaggccaagtctggtctcggaaagacg
gccgtctttgtcctgacgaccctccagcaggtcgagcccgtcgctggcgaggtctccgtc
ctcgtcatgtgccacactcgtgagctggccttccagatccgcaacgagtacaaccgcttc
agcaagtacatgcccgatatcaagacgggcgtcttctacggtggtacgcccatccagaag
gatgttgagacgatcaagaacaaggacacctgccctcacatcattgtcggcacccccggt
cgtctgaacgccctcgtccgcgacaaggtgcttcgcctcggcagcgtcaggatctttgtt
ctcgacgagtgcgacaagatgctcgaccagattgacatgcgtagggacgtacaggaaatc
ttccgggccacgcccacccagaagcaggtcatgatgttctcggccactctttccgacgag
gtcaagcccatctgcaagaagtttatgcagaacccgaccgagcactacgtcgacgaggac
acgaagctcacgctccacggtcttcagcagtactacatcaagctcgaggagcgtgagaag
aaccgcaagctcaacgagctcctcgacgacctgcagttcaaccaggtcatcatcttcgtc
aagagcacgctgcgcgccaccgagcttgacaagctgttgcgcgagtgcaacttcccctcg
atcgccgtgcactcgggcgtgtcgcaggaggagcgtattcgccgctacaaggagttcaag
gacttcaacaagcgcatctgtgtcgccacggacgtctttggacgtggtatcgatattgag
cgtatcaacctggccatcaactatgatctgcccggtgatgctgattcgtacctccaccgc
gtcggccgtgccggtcgtttcggcaccaagggtctcgccatctcctttgtcagcactgac
ggcgacaaggaggtgctggccgcgatcgagaagcgcttcgaggtcgctcttcctgagttt
cccaaggacggcgtcgatcccgccacgtacatggcctcttag

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