Verticillium dahliae: VDAG_02005
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Entry
VDAG_02005 CDS
T03450
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vda
Verticillium dahliae
Pathway
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_02005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vda03041
]
VDAG_02005
03009 Ribosome biogenesis [BR:
vda03009
]
VDAG_02005
Enzymes [BR:
vda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VDAG_02005
Spliceosome [BR:
vda03041
]
Complex A
U2 snRNP components
U2 related factors
VDAG_02005
Complex B
VDAG_02005
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
VDAG_02005
Ribosome biogenesis [BR:
vda03009
]
Eukaryotic type
90S particles
Helicases
VDAG_02005
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
SRP54
T2SSE
AAA_19
Flavi_DEAD
ResIII
Cas3-like_C_2
NB-ARC
nSTAND3
AAA_23
Motif
Other DBs
NCBI-GeneID:
20703468
NCBI-ProteinID:
XP_009656329
UniProt:
G2WWL9
LinkDB
All DBs
Position
7
AA seq
770 aa
AA seq
DB search
MADANGKRHSSDDGQAAYERRKKMKTDSPDIKMEKYESIDEKVKVNPYLAHMNNGGGDDP
FADFEPRNTTAKQAAVVEDLTHNAFTGKEHTKKYFDILRTRRDLPVHKQRQEFLDKYHST
QILVFVGETGSGKTTQIPQYVLYDELPQRNRKLVACTQPRRVAAMSVAQRVADELDVPLG
DEVGYSIRFEDKTSPRTVLKYMTDGMLLREAMHDHQMSRYSCIILDEAHERTLATDILMA
LLKNVAQRRPDLKIIVMSATLDAQKFQRYFNDAPLLAVPGRTFPVEIFYTPEPEKDYVEA
AIRTVLQIHASEGEGDILVFLTGEEEIEDACRKINLEADEMVREIDAGPLAVYPLYGTLP
PGQQQRIFDKPPAPFKPGGRPGRKCIIATNIAETSLTIDGIVYVVDPGFSKQKIYNPRIR
VESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTEQAFKKELIEQTYPEILRSNLANTVL
ELKKLGVEDLVHFDLMDPPAPETMMRALEELNYLACLDDEGELTALGSKASEFPLDPALA
VMLISSPEFYCSNEILSITSLLSVPQIWMRPAASRRRADEMKAHFTHPEGDHLTLLNAYH
AFKGEIQKGADVKRWCHDHFLSYRHLQSADNVRAQLKRIMETHDVDLMSTPFEDKNYYNN
IRRAMLAGFFMQVAFRESSGKVYRTIKDDQAVMLHPSTVLKTDYEWVVYNEFVLTSKQYI
RTCTGVRPEWLLEIAPIYYDLSTFTKGDARSALVRASEKKRRKEAMKAGR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgccaacgggaagcgccacagttctgacgacggtcaagctgcgtacgagagg
cggaagaagatgaagacggacagccccgacatcaagatggaaaaatatgaaagcatcgac
gaaaaggtcaaggttaatccctaccttgcccatatgaacaatggtggcggcgacgacccc
tttgccgacttcgagccccgtaacaccacggccaagcaggccgcggtcgtggaggacctc
acccacaacgccttcaccggaaaggagcatacgaagaagtatttcgatattttgcgtacg
cgtcgcgaccttccagtccacaagcaacgccaggagtttcttgacaagtaccactcgaca
cagatcctcgtcttcgttggtgagacgggttctggcaagacgacacagatcccgcagtat
gtcctctacgacgagttgccccagcgcaacaggaaactcgttgcctgcacacaaccgcgc
cgtgtggcagccatgtccgtcgctcagcgtgtcgccgacgagctggatgtgcctcttggt
gacgaggttggttacagcatccgtttcgaggacaagaccagccccagaacggtactgaag
tacatgactgatggtatgctgctccgcgaggccatgcacgaccaccaaatgtcccgctac
agctgcatcattcttgacgaggcacacgagcgcacgctagccaccgatatcctcatggcc
ctgttgaagaatgttgcccagcgccgtcctgacctgaagatcatcgtcatgtctgccacg
ctcgatgcccaaaagttccaacgctacttcaacgacgcccctcttcttgcagtgcccggt
cgcaccttccctgtcgagatattctacacccctgagccagagaaagactacgtcgaagct
gccattcgcactgttctgcagattcacgcctccgaaggcgagggagacatcctcgtgttc
ctaacgggcgaggaggagattgaagacgcgtgtcgcaaaatcaaccttgaggctgacgaa
atggttcgcgagattgacgccggcccgctcgctgtttacccgctttacggcaccctgccg
cctggtcagcagcaacgcatcttcgacaagcccccagcaccattcaagcctggcggccgt
cccggccgcaagtgcatcattgcgacaaacattgcagagacgtcactgaccattgatggt
atcgtatacgttgttgaccccggcttcagcaaacaaaagatttacaacccccgtatccgc
gtcgagtctcttctcgtgtcccccatctccaaggcgtccgcgcagcagcgtgctggtcgt
gctggccgaacaaaacccggcaagtgcttccgcctatacacggagcaggccttcaagaag
gagctcattgagcagacgtaccctgagattctgcgttcgaacctggccaatactgttctc
gagctgaagaagctgggcgtcgaggatcttgtccactttgatctcatggatccccctgcg
ccagagacgatgatgcgcgcccttgaggaactcaactacctggcatgccttgacgacgag
ggcgaactcacggccttgggcagcaaggcctccgagttccccctcgacccagcccttgcc
gtcatgctcatatcgtcgcccgagttctattgctccaacgagatcctttccatcacgtcc
ctcctgtcggtaccccagatctggatgcgccctgccgccagccgtcgtcgcgccgacgag
atgaaggcacactttacgcatcccgagggcgaccacctgacgcttctcaatgcctatcac
gccttcaagggtgagatccagaagggcgcggacgtcaagcgctggtgtcacgatcacttc
ctgtcctaccgtcaccttcagagtgccgacaacgtgcgcgcccagctcaaacgcatcatg
gagacgcacgacgttgacctcatgtcgaccccgtttgaagacaagaactactacaacaac
attcgtcgggctatgctggcaggcttcttcatgcaggtcgctttccgtgagagctctggc
aaggtgtatcgtaccatcaaggatgaccaagccgtcatgcttcacccgtccacagtcctc
aagacggactacgaatgggtggtctacaacgagttcgtactcacctccaaacagtacatc
cgtacctgcaccggcgtacgcccagagtggcttcttgaaatcgcacccatctattatgat
ctcagcacatttaccaagggtgacgcgaggtcagcgttggtccgcgcgtcagagaagaag
cgccgcaaggaagctatgaaggcgggacggtaa
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