KEGG   Verticillium dahliae: VDAG_04431
Entry
VDAG_04431        CDS       T03450                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vda  Verticillium dahliae
Pathway
vda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDAG_04431
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vda03041]
    VDAG_04431
Spliceosome [BR:vda03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    VDAG_04431
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd PRP4 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st WD40_RFWD3 Beta-prop_DCAF4 WDR54 Beta-prop_Vps41 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 20705894
NCBI-ProteinID: XP_009649173
UniProt: G2X2A7
LinkDB
Position
1
AA seq 515 aa
MMHPSRQAYVEEMDDDRGIALEDVPLDHDYEIPSASAGVAPEKASAVMAQFERKRLAASI
AVPTDDGRVRAKLRELGEPVTLFGEGPAERRDRLRQLLAIQKELAGLEDGDVDMEDAGDQ
EDEEQEEEFYSRGGPDLLKARIDIAKFSLPRAKRRAKFQKAEATIPLRTHVKFRKEIKEK
LDAFELQGSQTAGDRHVSMTRLSPNGEIAAVGNWGGAVKLLEIPSLTEKMNLRGHTNKIS
GLSWYPGSTLPECNVSPDSVNLASGGAEGTVNLWSLNQDTPLSTLQGHSARVCRVEFHPS
GKYLASASEDTTWRLWDIETTAEVLLQEGHSRGVYAVSFNSDGSLLASAGLDSIGRIWDL
RSGRTVMILDEHIKPIHALDWGADGHRVLTGSADGWIKCWDVRKVQRTGGLGAHTSAVSD
LRWFKGLDDPVDGVPPGVDEKGAQLPKKSGTFLVSSGFDAKVKVFSADNWGLIQTLSGHT
GPVASVDVSRDGKWIVSGGHDRTVKLWGRNDMEGL
NT seq 1548 nt   +upstreamnt  +downstreamnt
atgatgcacccgtcgcgccaggcgtatgtggaggagatggacgacgaccgggggatagct
ctcgaggatgttcccctcgatcacgattacgagatcccttccgcctccgctggtgtcgcg
ccggaaaaggcgtctgccgtcatggctcagtttgagcgcaagcgattggcggccagtatc
gctgtcccgaccgacgatggacgagtacgcgccaaactgcgggagctgggagaacctgtc
accctgttcggcgagggtcctgccgaacggagagatcgattgcgacagcttcttgctatt
cagaaggaacttgctggcttggaggacggcgatgtcgacatggaggatgcaggcgaccag
gaagacgaggagcaagaagaagagttctattcgcgcggtggcccagacctgttgaaggct
cgcatcgacattgcgaaattttctctcccccgtgcgaaacgacgcgccaagtttcagaag
gcggaggcgacgataccactccgaacacatgtcaagttccgcaaagagatcaaggagaag
cttgatgcctttgagcttcagggaagtcagacagcgggcgaccgtcatgtgagcatgact
aggctgtcacccaatggcgagatagcggctgtgggtaactggggcggagccgtgaagctt
ctcgagatcccatcccttacagagaagatgaatttgagaggacacaccaacaagatcagc
ggtctgtcctggtaccctgggtctacgttgccggaatgcaacgtctccccagactcggtc
aaccttgcctcaggcggtgctgagggtactgtcaacctctggtccctcaaccaagacact
cctctctccactctccaaggccacagcgcacgggtgtgccgtgttgagtttcatccgtct
gggaagtatttggcatctgcctcggaagacacgacgtggcggctttgggacatcgagact
acggctgaggtgttactgcaagaaggacattcacgaggcgtatacgccgtgagcttcaac
tcggacggatcactgctcgccagtgctggtcttgacagcatcggccgcatttgggatctc
cggtcaggcaggactgtgatgatcctagacgaacacatcaagccaatccatgctctggac
tggggtgccgacggccacagagttcttacgggctcagcagacggttggatcaagtgctgg
gatgtaagaaaggtccagaggaccggtggcctcggtgcgcataccagtgcagtgtccgat
ctgagatggttcaaggggctcgacgatcctgtggacggtgttcccccgggagttgatgaa
aagggtgcccagctgccgaagaagtccgggaccttcttggtttccagtggcttcgacgca
aaagtcaaggtcttctctgccgataactggggtctcattcagacattgagcggtcatacg
ggacctgtagcgagtgttgatgtgagtagagatggcaagtggattgtcagtggagggcat
gaccggactgtcaagctctggggtcgtaacgatatggaaggcctttaa

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