Verticillium dahliae: VDAG_05344
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Entry
VDAG_05344 CDS
T03450
Name
(RefSeq) pectate lyase B
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vda
Verticillium dahliae
Pathway
vda00040
Pentose and glucuronate interconversions
vda01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
VDAG_05344
Enzymes [BR:
vda01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
VDAG_05344
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Ribosomal_60s
Peptidase_S26
Motif
Other DBs
NCBI-GeneID:
20706807
NCBI-ProteinID:
XP_009650534
UniProt:
G2X628
LinkDB
All DBs
Position
2
AA seq
380 aa
AA seq
DB search
MKFSGIASSVAVLAAVASATPTPASWTPKSLLATRTIEKRASVEDACDIGFCTEGTGTTG
GAGGPTTTVTSLADYQAALEAEGAAIVVVNGAISGSARIRLASDKTVIGLPGSSITGIGH
YINKQSNVILRNLKISKVVAANGDAIGIQESTNVWVDHCDLSSDLSHGKDFYDGLLDITR
ASDFITVSNTYLHDHHKASLIGHSDNNAAQDTGKFHVSYINNHWENTGSRNPSVRFGTAV
HIVNNLYDNVGLTGVNARMGAQVLVESTSFVNSANPIVSRDSKKTGFVVVKDVIGAADNA
VPKGTLTSVPYAYTALGSANVGSVAQTAGQKLTFDGSSAPAPAPAPATKPSAPVADDEEV
EEVCTRRRVKKSLRRKALRA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaagttctccggtattgcctcttccgtcgccgtcctggccgccgtcgccagcgcgacc
cccacccccgcctcgtggacccccaagtccctcctggccacccgcaccatcgagaagcgt
gcctcggtcgaagacgcctgtgacattggtttctgcaccgagggcaccggcactaccggt
ggtgccggcggtcccaccacgaccgtcacctcgctcgccgactaccaggccgcgctcgag
gccgagggtgccgccattgtcgttgttaacggcgccatctctggcagcgcccgcattcgc
ctcgcctctgacaagaccgtcattggtcttcccggctcgtccatcactggcatcggccac
tacattaacaagcagtccaacgtgatcctgaggaacctcaagatctccaaggtcgtcgcc
gccaatggtgacgccattggcatccaggagtccaccaacgtctgggtcgaccactgcgac
ctctcgtccgacctcagccacggcaaggacttctacgacggcctgctcgacatcactcgt
gcctcggacttcatcaccgtgtccaacacgtacctgcacgaccaccacaaggcctcgctc
atcggccacagcgacaacaacgctgcccaggacactggcaagttccacgtttcctacatt
aacaaccactgggagaacacgggctcgcgcaacccctcggttcgcttcggcaccgccgtc
cacatcgtgaacaacctctacgacaacgtcggcctcaccggtgtcaacgcccgcatgggc
gcccaggtcctcgtcgagtcgacctcgttcgtcaactcggccaaccccatcgtctcgcgc
gactcgaagaagacgggcttcgtcgtcgtcaaggacgtcattggcgccgccgacaacgcc
gtccccaagggcacactgacctcggtcccctacgcctacaccgccctcggctccgccaac
gtcggctccgtcgcccagaccgccggccagaagctcacctttgacggctcctctgctccc
gctcccgctcccgctcccgccaccaagccctctgcccccgtcgctgacgacgaggaggtc
gaggaggtgtgcacccgccgccgcgtcaagaagagcctccgccgcaaggctctccgcgcc
taa
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