Verticillium dahliae: VDAG_05625
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Entry
VDAG_05625 CDS
T03450
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
vda
Verticillium dahliae
Pathway
vda03020
RNA polymerase
vda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VDAG_05625
09124 Replication and repair
03420 Nucleotide excision repair
VDAG_05625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vda03021
]
VDAG_05625
03400 DNA repair and recombination proteins [BR:
vda03400
]
VDAG_05625
Enzymes [BR:
vda01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VDAG_05625
Transcription machinery [BR:
vda03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
VDAG_05625
DNA repair and recombination proteins [BR:
vda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
VDAG_05625
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-GeneID:
20707088
NCBI-ProteinID:
XP_009650815
UniProt:
G2X5X0
LinkDB
All DBs
Position
2
AA seq
1260 aa
AA seq
DB search
MAAEYDEEFDYDGYEEDDASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELID
EYSHITLDQPNPASDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLT
YASPLYVRITKKVSIAVENQIPLNELDDEQHDEMARTGEHPTRLEWEEEESGDDPGADKD
KPEDMKDMIFIGRMPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQE
RSAANIVQVFKKAQPSPFSYTAEIRSALEKGSRLISSLMLKLHSTSPAKGGVGQTIHCTL
PYVKVDIPIGIVFRAFGIVSDEDILNHICYDRNDTQMLEMLRPCIEEAFIVQDRNVALDW
IGKRGNSNHTMTREKRVRSAKEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGR
RDIDDRDHFGKKRLDLAGPLLAKLFRTIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQT
LSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR
QLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPL
RYPNATKVFLNGVWVGVHQDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGR
VMRPVFVVEQSHHGAVPQGSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYL
DAEEEETSMICMTPEDLELYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHCEIHPS
MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATT
RSMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRV
GINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDNQELG
QRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQ
KGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATP
FTDVTVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR
ARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEIC
GLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFTDRSGVSIR
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgagtacgatgaagaattcgactatgatggatacgaggaggacgacgcaagc
atcactcccgaagattgctggactgtcatatcgtcattcttcgactcgaaaggcttggtg
tcgcagcaggttgactctttcgacgagttcacgacatctacagtccaggagctcatcgac
gagtactcccacataaccctcgaccagccgaaccccgcatccgacagtgatagagcgatt
gcactgcgcagatatgaagtcaaattcggcacggtcatggtctccagaccatcgatcact
gaggcggacggcaaagtctccacgctactgccctacgaatgccgtgaccgcaacctgaca
tacgcgagtcccctctatgttaggattacgaagaaagtgtccatcgctgttgagaaccaa
attccgcttaacgagctggatgacgaacagcatgacgagatggccaggacaggcgagcat
ccgacacgactagagtgggaagaggaggagagtggcgacgacccaggtgccgacaaagac
aagccagaagatatgaaggacatgatctttattggacgcatgcctatcatggtgaaatcc
aagatctgccacctcagccgcgagagcgagaacgacctctttatgctgaacgagtgccct
tacgaccagggcggctactttgtcatcaacggcagcgagaaggttctcatcgcccaggaa
cgctccgctgcgaacattgtacaggtcttcaagaaagctcagccaagccccttctcgtac
actgccgagattcgcagtgctctcgagaagggctcgcgactgatttcgagcctgatgctc
aagctgcacagcacgagccctgccaagggcggagtcggccagacaatccactgcactctg
ccgtatgtcaaggttgacatacccattggcatcgtcttccgcgccttcggtatcgtgtct
gatgaagatattctcaatcacatttgctacgacagaaacgacacgcaaatgctggaaatg
ctacggccttgcatagaagaggcctttatcgtccaggaccgtaacgtagcccttgactgg
atcggcaagcgcggcaacagcaatcacacgatgactagagagaagcgtgtgcgaagtgcc
aaggaaatcctgcagaaggagacgttgcctcatatctcacagagcgaaggcagtgagacc
aggaaggcttttttcctcggctacatgactcacaagctgctgcagtgcgccttaggaaga
cgcgatattgacgaccgcgatcatttcggaaagaagcgattggacctcgcaggacctctg
ttggcgaagctcttccgcaccattgttcgtcgcatgaatcaggagctttcggggcatctc
aagcgttgcgtcgaatctaaccgacagttcagcctgactctcggcgtcaaaccccagacg
ttgtctaatggtctcaaatactcgctagctacaggaaattggggagatcagaagaaggct
gcgagctcaaccgctggtgtgtcccaggtcttgaaccggtacacattcgcatcaaccttg
tcgcatttgcggcggacgaacacgcccatcggcagagatggcaaaatcgccaaacctaga
caactccacaacactcactggggtttggtgtgtcccgccgaaacgccagaaggacaggct
tgcggtcttgtcaagaacctatccttgatgtgctatgtcagcgtcggcacgccagcagag
cccatcattgattacatgatccagcgtggtatggaagttttggaagagtacgagccgctt
aggtatcccaacgcgaccaaggttttcctcaacggtgtctgggtaggcgttcatcaagac
ccgcgcgtgctcgtccccgacgttcagggcacacgtcgtcgtaatgtcatatctcacgaa
gtgtctctggtccgcgacattcgcgaccgcgagttcaagatcttctccgacgctggtcga
gtcatgagaccggtcttcgttgtcgagcagagccaccacggtgccgtacctcagggctcg
ctcgtactgcagaaggatctcgtcaatgagatgcgagaccagcaagaaaacccccccgat
aacccagaagacaagatcacgtggcaaaccttggcccacagcggcatcatcgaatacctt
gacgctgaggaagaagagacatcgatgatttgcatgacgcctgaggatctagaactctac
cgattgcgcaaagctgggcatgaagttgaagaggatatctccgaagggcctaatcgccgc
ctacgaacaaagatcgccaaaacgacgcatatgtacacccactgcgagatccatccgagt
atgattctgggaatctgcgccagtatcattcccttcccggaccataaccagtcgcctcgt
aacacataccaatccgccatggggaagcaagcaatgggttttttcctgacgaattactct
cgaagaatggacacaatggccaacattctttactacccgcaaaagcctctcgccacgaca
aggtcaatggagtttctgaaattccgagagcttcccgcagggcagaatgccgtcgtcgct
attgcatgctattctggctacaaccaggaggactcggtcatcatgaatcaaagcagcatc
gatcgaggcctattccgcagcctgttcttcaggtcgtacacggattgcgagaagcgagta
ggcatcaatctcgtggaacaatttgagaaaccgttcagaaacgataccttgcgccttaag
catggaacgtacgacaagttggatgacgatggtattgtggcgccaggtgttcgtgtttct
ggcgaggacattatcattggcaagacgtcgccgattaaccccgataaccaagagcttggc
caacgaacgatgcagcacgtcaaacgagatgcctcaacaccattgcgaagtacggaaaac
ggcatcattgactcggttatcctcacaacgaaccaggacggcttgcgatatgtcaaggtg
cgagtgaggaccaccaagattccgcagatcggcgacaagtttgcttctcgtcacggtcag
aaaggaacgattggtgttacgtaccgccaggaagacatgcccttcacctcagagggtatc
accccggacatcatcatcaaccctcatgccatcccttcacgaatgaccattgcgcatctg
attgaatgtctgcttagcaaagtgtcgacattgaagggtatggaaggagacgcaacgcct
tttaccgacgtgactgtagactccgtctcgcagcttctccgcgaccaaggttatcagtct
cgaggattcgaggttatgtataatggccacactggaaagaaattgcgtgctcaggtattt
tttggaccaacttattaccagcggctgcgtcacatggtcgacgacaagattcatgcacgc
gcccgcggccccgtgcagatcatgacaaggcagccagtcgaaggtcgagcccgcgatggt
ggcttacggtttggcgagatggagcgagattgcatgattgcacacggtgctgcctcgttc
ttgaaggagaggttgttcgaggtctcggatgctttccgggttcatatttgtgaaatctgt
ggtctcatgacaccaatcgcaaacctttcaaagcaatccttcgagtgccgcccttgcaag
aacaaaacgaaaattgctcaaatccatataccgtatgcggccaaacttcttttccaggaa
ctgcaatcaatgaacattgctgcccgaatgttcacggacaggtctggcgtttcgatccgc
tga
DBGET
integrated database retrieval system
