Verticillium dahliae: VDAG_06348
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Entry
VDAG_06348 CDS
T03450
Name
(RefSeq) U3 small nucleolar RNA-associated protein
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
vda
Verticillium dahliae
Pathway
vda03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VDAG_06348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vda03009
]
VDAG_06348
Ribosome biogenesis [BR:
vda03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
VDAG_06348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BP28CT
U3snoRNP10
HEAT_HEATR1
TOR1L1_N
HEAT
GNC1_N
Motif
Other DBs
NCBI-GeneID:
20707811
NCBI-ProteinID:
XP_009657021
UniProt:
G2X790
LinkDB
All DBs
Position
8
AA seq
1786 aa
AA seq
DB search
MATSLAAQLAQIAASSKSSLNVKAQKASHSKSLIFEPRVAATQSFQALYKICLEGFDELC
QLDPRFRPFALTLFSEQSQSEDRTQMTAGENAELDAKIDAFLRLAGSRLRLMPAIKAIEW
LIRRFQIHEDNTKALLTTFLPYHSIPAFVTLLSILPAKIPAEYRFLHPYIRSLTSPPRSV
IVHKGIQKSDFLSTLSEYTLEACRHQQQYPTLVSFWGGLMTEAVNGLLENARSHADRHLH
GHLRLCRQGHFDDGVLSAFMEQIVHGWSHETARPGLVCLSILAQHRSAKQMSGKVTKALM
KVPDLGAVLVDIGRQQRADKLTNGLCIALVERLCKKGDDRGLPVIRAVLTGQVLQEKQIA
VVFKSLVLAAHRLNDEIDPDGQVRKELGSTLIDLSRHTGDSSDIIQSVIQEGDLDVEALE
MKLDVSIRQQKVLQAPEDVDMTGTRPARAPKLDLHAALERHAAAQEAAPPLPSCLSASPG
DVYDEFGQLFLQIVAQSSEEPALLTTFTQLPTLHRQEAATDCTYAAFFIRIWCGPYPTLA
RAAALDAVKQGFQAGNAANTDFQAIIPFCLVALLDSSRKVRRAAADLLIQVKAMSPAAPA
KGKKPRAWGGNGLYPDGVKVQAMEPEVVSKLLNDVLLPSLEECIMHEDFISTLLHASLDS
SAKKADDKKALSQSTRQSIFASLASHVVASPLLRVKSSLLALLNQIKGVSSVSRTKVLLP
AFRWWAALTADEATVLCQNEQVDPFALHRRFAETVVANDQGGLEFLLSIIQDPASERRPE
LVRSNFARLRAMWAAMKSDTKSDVSRTMLDIYQNRRNTGDEQQQREQQQQQQQSVVADEA
ADLLKNVDLTTDILAHALSAIQAQTRAVTEAPPNKRRRTSTEANRGSQVYTPAELNKTLR
DVTFVLQLVEGSDPKAHPELLHSLFDTLSELQRFGVVVGSELGYLQNLVLTSLIAMVPAY
KTDKKLKIDSSGGHGDLLANCLQKSTSPIVQNSALLLIASLATAAPDVVLHSIMPIFTFM
GASVLRQNDDYSAHVVNQTIKEVVPPLMESLKKGKRNPIAGATELLVSFVTAYEHIPSHR
KQDLFVSLVDTLGPEEFLFALLAMLVDKYGSGPSIASFAADLLAVYNAEVQLHTLAKLLD
LISDIFKPRPALSATLLGVGDELAERDVNTVALQQLSVFPSLLSGRKLRKEIGILTERDD
METSKMRELYATLLKDTLALAETVKPTRALHECCGSALANLLNLLSIGEFIKAVENLMDK
TEIDLRRKVLRALEVRVEQEGTADATSRAALLGFLPQLTAAIRDTDDLKYKHTAVACVDK
IAEKYGKKDLEAVAAAAATIAGPSCLGQPDTQLRVMALLCLASLVDVLQDGILPVLALAV
PQAILYIRQSLEAEDGDEQSSDLHNAGYSFMTALAQHLPYMVTGAYLDQVLLASNASAEA
DLDDDASDSRLNCVRFLARKVEPKVFFAGLERNWEAALAAGNEAISEYVDVLGVAVESHP
KSVIAKNVTVLSTILLKTLDLRRQQLAKEAATQSQLEALSALEDAVNDVAIKMVYKLNDA
AFRPIFTQVVEWSGQVSKSDKAGRTRRRHSVYGFLQVFFEKLRSIVTSYSTYIVEDAVAI
LQGADLADGEQRQLWSRVLGTLAQSFEHDQDDFWQAPAHFGGVAGVLTGQLTRAGGSDKL
DVGAHLIPALIELASAADSADHQKELNTAVLKHLRDERAGVRLAAVKCQQALTDKLGEEW
LSALPEMLPYISELQDDDDEAVERETHRWIVKIEGVLGESLDSMLQ
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctccctagccgcccagctcgcgcaaatcgccgccagctccaagtcgtctctc
aacgtcaaggcgcaaaaggcgtcccactccaagtctctcatcttcgagccccgcgtcgcc
gccacccagagcttccaggctctctacaaaatatgcctcgagggcttcgacgagctgtgc
cagctcgacccgcgcttccgcccctttgccctgaccctcttcagcgagcagagccagagc
gaggacaggacccagatgacggctggcgagaatgcagagctcgacgccaagattgacgcc
ttcctgcgcctcgccggcagccgcctgcgtctgatgcctgcgatcaaggccatcgagtgg
ctcatcaggcggttccagatccacgaggacaacacgaaagccctgctgacgaccttcctc
ccctaccactccatacccgcctttgtcaccctgctgtccattctccccgccaagataccc
gccgaataccgcttcctgcacccctacattcgctccctgacgagcccgccccggtccgta
atcgtccacaagggcatccaaaagtccgacttcctctcaaccctctccgaatacaccctc
gaggcctgccgccaccagcagcagtaccccaccctcgtctccttctggggcggcctcatg
accgaggccgtcaacggcctgctcgagaacgcccgctcccatgcagatcgccacctacat
ggccatctccgtctttgccgccaaggccacttcgacgacggcgttctgtccgcctttatg
gagcagattgtccacggctggagccacgagacggcccgccccggcctcgtctgcctctcc
atcctcgcccagcaccgctccgccaagcaaatgtccggcaaggtcacaaaggccctcatg
aaggtccccgaccttggtgccgtcctcgtcgacattggccgccagcagagggccgacaag
ctgaccaacggcctctgcatcgctctcgtcgagcgcctctgcaaaaagggcgacgaccgc
ggcctgcccgtcatccgcgccgtcctcaccggccaggtcctgcaggagaagcagattgcc
gtcgtcttcaagtccctcgtcctcgcggcccaccgcctcaacgacgagatcgaccccgac
ggccaggtccgcaaggagctcggctcgaccctgatcgacctctcccgccacacgggcgac
tcgagcgacatcatccagagcgtcatccaggagggcgacctcgatgtcgaggcgctcgag
atgaagctcgacgtctccatacggcagcaaaaggtgctgcaggcaccagaggatgtcgac
atgacgggcaccaggcccgccagggccccgaagctcgacctccacgccgccctcgagcgc
cacgccgccgcgcaggaggccgcccctcctctgccctcgtgcctctccgccagccccggc
gacgtgtacgacgagttcggccagctgttcctccagatcgtggcgcagagctccgaggag
cccgccctcctgaccacctttacccaactcccgaccctccaccgccaagaggcggccacg
gattgcacctacgccgcctttttcatccgcatctggtgcggcccctaccccacgctggct
cgtgccgcggctctggacgccgtcaagcagggcttccaagccggcaacgccgccaacacg
gacttccaggccatcattcccttttgcctcgtggccctactcgactcgtcgagaaaggtg
cgccgcgccgctgctgatctcctcatccaggtcaaggccatgtcccccgccgcccccgcc
aagggcaagaagccgcgggcctggggaggcaacggcctctacccggacggcgtcaaggtc
caggccatggagcccgaagtcgtctcgaagctgctcaacgacgtcctgctgccgagcctc
gaggagtgcatcatgcacgaggactttatcagcaccctcctccacgccagcctcgacagc
agcgccaagaaggcggacgacaagaaggcgctgtcgcagtcgacgaggcagtccatcttc
gcgtccctcgcgagccacgtcgtcgcgtcgcccctgctcagggtcaagtccagcctcctc
gcgctgctcaaccagatcaagggcgtgtcgtccgtgtcgaggaccaaggtcctgctgccg
gcgttccgctggtgggccgccctcactgccgacgaggcgacggtgctgtgccagaacgag
caggtcgacccctttgcgctccaccggcggtttgccgagacggtcgtggccaacgaccag
ggcggcctcgaattcctgttgtccatcatccaggacccggcctctgagcgccgcccggag
ctggtgcggtcgaactttgcccgcctgcgcgccatgtgggccgccatgaagtcggacacc
aagtcggacgtctcgcgcaccatgctcgacatttaccagaaccgccgcaacacgggcgac
gagcagcagcagcgcgagcagcagcagcagcagcagcagagtgtggtcgccgacgaggcg
gccgatctcctcaagaacgtcgacctgacgacggacattctcgcgcacgcgctgtctgcc
atccaggcgcagacgcgcgccgtcaccgaggcgccgccgaacaagcgccgcaggaccagc
accgaggcgaaccgcggctcgcaggtctacacgccggccgagctcaacaagacgctgcgc
gacgtcacctttgtgctgcagctcgtcgagggctccgaccccaaggcgcaccccgagctg
ctgcacagcctcttcgacacgctctcggagctgcagcgcttcggcgtcgtcgtcggctcc
gagctgggctacctgcagaacctcgtgctcacgagcctcatcgccatggtgcctgcctac
aagacggacaagaagctcaagattgacagctcgggcggccacggcgacctcttggccaac
tgcctgcaaaagtccacgagtcccattgtgcagaactcggccctgctcctcattgccagc
ctggcgacggcggcgcccgacgttgtgctgcacagcatcatgcccatcttcacctttatg
ggcgcctcggtcctgcgccagaacgacgactactcggcccatgtcgtcaaccagacgatc
aaggaggtcgtgcccccgctcatggagtcgctgaagaagggcaagaggaaccccatcgcc
ggcgcgacggagctcctcgtcagctttgtcacggcctacgagcacattccctcgcaccgc
aagcaggatctcttcgtctcgctcgtcgacacgctcggccccgaggagttcctgttcgcg
ctcctcgccatgctcgtcgacaagtacggctccggcccgagcatcgcgtccttcgccgcc
gacctgctggccgtctacaacgccgaggtgcagctgcacacgctcgccaagctcctcgat
ctcatcagcgacatcttcaagccgcgaccggcgctgtcggctacgctcctgggcgtcggg
gacgagctggccgagcgagacgtcaacacggtggctctccagcagctctccgtgttcccc
tcgctgctgtcgggccgcaagctgcgcaaggagattggtattctgacggagcgtgacgac
atggagacgtccaagatgcgggaactgtacgcgacgctgctcaaggacacgctggcgctg
gccgagacggtcaagcccacgcgggcactgcacgagtgctgcggctcggcgctggcgaac
ctgctcaacctcttgtcgattggcgagttcatcaaggctgtggagaacctcatggacaag
acggagattgacctgcggcgcaaggtgctgcgggcgctcgaggtgcgcgtcgagcaggag
ggcacggcggacgcgacatcacgggcggcgctgctgggcttcctgccgcagctgacggcg
gccattcgcgacacggacgatctcaagtacaagcacacggcggtggcgtgcgtggacaag
attgcagagaagtacggcaagaaggacctcgaggcggtggcggcggcggcggcgacgatt
gccgggccctcgtgcctcggccagccggacacgcaactgcgcgtcatggcgctgctctgc
ctggcgtccctcgtggacgtgctccaggacggcatcctgccggtgctcgcactggcggtt
ccgcaggcaattctgtacattcgccagagcctcgaggcggaggatggcgacgagcagagc
agcgacttgcacaacgcgggctattcgttcatgacggcgctggcacagcatctgccgtac
atggtgacgggggcctatctcgatcaagtgctcctggcatccaacgcgtcggcggaagcg
gacctcgacgacgatgccagcgacagccggctcaactgcgtccgcttcctggcgcgcaag
gtggagcccaaggttttcttcgcgggtctcgagcgcaactgggaggcggcgctcgcggct
ggaaacgaggccatcagcgaatacgtcgacgtgctgggcgtggctgtcgagagccacccc
aagtcggtgatcgccaagaacgtcacggtgctctcgacgattctcctcaagacgctcgac
ctccgacgacagcagctggccaaggaagcggcgacacagagccagctcgaggcgctctcg
gcattggaggatgccgtcaacgacgtggcgatcaagatggtgtacaagctcaacgacgcg
gcgttccgacccatcttcacgcaggtggtggagtggtcgggccaggtgagcaagtcagac
aaggcaggacgcacgaggcggcggcacagcgtgtacgggttcctgcaggtctttttcgag
aagctgcgttcgatcgtgacgagctactcgacgtacattgtcgaggacgccgtggcgatc
ctgcagggggcggacttggcggacggcgagcagaggcagctgtggtcgcgggtgctcggc
acgctggctcagtcgtttgagcacgaccaggacgacttttggcaggcgccggcgcacttt
ggcggcgtcgcgggggtgctcacgggccagctcacgcgggccggcggttccgacaagctg
gatgtcggggcacacctcatcccggccctcatcgagctcgcgagcgcggcggactcggcg
gaccaccagaaggagctcaacacggcggtgctcaagcacctgcgggacgagcgggccggc
gtcaggctggcggcggtcaagtgccagcaggcgctcacggacaagctgggcgaggagtgg
ttgtcggcgctgccagagatgctgccgtacatcagcgagctccaggacgacgacgacgag
gctgtagagagggagacgcaccggtggattgtcaagattgagggtgtgctgggtgagagt
ctcgactcgatgctgcagtaa
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