KEGG   Verticillium dahliae: VDAG_06357
Entry
VDAG_06357        CDS       T03450                                 
Name
(RefSeq) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vda  Verticillium dahliae
Pathway
vda03030  DNA replication
vda03410  Base excision repair
vda03420  Nucleotide excision repair
vda03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VDAG_06357
   03410 Base excision repair
    VDAG_06357
   03420 Nucleotide excision repair
    VDAG_06357
   03430 Mismatch repair
    VDAG_06357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vda03032]
    VDAG_06357
   03400 DNA repair and recombination proteins [BR:vda03400]
    VDAG_06357
Enzymes [BR:vda01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VDAG_06357
    6.5.1.6  DNA ligase (ATP or NAD+)
     VDAG_06357
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VDAG_06357
DNA replication proteins [BR:vda03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    VDAG_06357
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     VDAG_06357
DNA repair and recombination proteins [BR:vda03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VDAG_06357
   NER (nucleotide excision repair)
    Other NER factors
     VDAG_06357
   MMR (mismatch excision repair)
    Other MMR factors
     VDAG_06357
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 20707820
NCBI-ProteinID: XP_009657030
UniProt: G2X799
LinkDB
Position
8
AA seq 893 aa
MAPKQATLGKFFGGQDGTKAKPQQSKLSFAARPAPKKEVKAERDGVADKENGAASAGVKE
EDGAKKDSKKRAHAGDDEDGKSSNRTVKTEEVSADEDDAPVVKRARRNRNRIEDDEDEGM
EEVPAPKPSPKKSPKKSKRASKSRSPSPKRAKASPTPVQASEDSDVESVGSVEDDLDGES
SAGSGAEDAGDAAKTVLKAKGKGKAAKGGKSAAQLLGALTAQTKDPYPDWNKGDPVPYAA
LCKTFSLVELTTKRLEIMAHCSKFLRQVLRLTPDDLLPTVLLMINKLAPDYAGIELGIGE
SLIMKAIGESTGRTLQIIKQDQKEIGDLGLVAVKSRSTQPTMFKPKPLTVRGVHKGLMGI
ATVTGNGAQGRKVDGIKKLLSSADAAGGKVDISKDKGGPSEAKFLIRFLEGKLRLGLAER
TVLVSLAQAVVNHEASVKDLVASPEDVEKAEAMLKTVYSELPSYDVIIPAMVEHGIMNLR
EHCKLKPGVPLKPMLAKPTKAITEVLDRFENQTFTCEYKYDGERAQIHYVAKSADEELSQ
SMPGATKEAANGVANIFSRNSEDLSKKYPDILAKLHTWVKPDTKSFVLDCETVAWDVVEK
KVLPFQQLMTRKKKDVKIDDVKVKVCVFAFDLLYLNGEALVEKSLRHRRDLMVEAFAPVE
GEFSLATSMDGQELEQIQEFLDESVKASCEGLMVKMLDGTESGYEPSKRSRNWLKIKKDY
LAGIGDSLDLVVLGAYHGKGKRTSVYGAFLLACYNPSGEVYETVCNIGTGFSEAVLEELH
KQLSEIVIDRPKPFYSHSAGGQHQPDVWFEPRYVWEVKTADLTLSPRYKAGAKEGVDPSG
EKGISLRFPRFIKIRDDKKPDEATSSRQVAEMYRKQESVAKSKGPAVDDDFEY
NT seq 2682 nt   +upstreamnt  +downstreamnt
atggcgccgaagcaagctacgctgggcaagttctttggcggccaggatgggaccaaggcg
aagccgcagcagagcaagctgagctttgcggcgaggccggcgcctaagaaggaggtcaag
gctgagcgggacggggttgctgacaaggagaatggcgctgcgtctgcgggtgtcaaggag
gaggatggagctaagaaagattcgaagaagcgagcgcatgcaggcgatgacgaagatggc
aagtcctccaacaggaccgtcaaaacagaagaggtctctgcggatgaggacgacgccccg
gttgtgaagcgtgcgagacggaaccgcaatcgcattgaggacgacgaggacgagggcatg
gaggaagtgccggctcctaaaccgagcccgaagaagagccccaagaagagcaagcgagct
tccaagtccaggtcaccttcgcccaagcgtgcgaaggcctccccgaccccggtacaagcg
tcagaagattctgatgtagagtctgtgggctcggtcgaggatgatctggacggcgaatct
tccgcaggttctggagccgaggatgctggggacgccgccaagacggtcctcaaggccaaa
ggcaaaggcaaggctgcaaagggcggcaagtcggctgcacagttgctgggagccctgaca
gcccagacgaaagacccgtatccagattggaacaagggcgatcccgtaccgtatgccgcg
ctctgcaagactttctcactggtcgagctcacaacaaagcgactggaaatcatggcgcat
tgctcaaagttcctccgtcaggtcttgcgtctcacacccgacgacctgctccccacagtc
ctcctcatgatcaacaaacttgcgccagattacgcgggcattgaactgggcattggagaa
tctctcatcatgaaggccattggcgagtcgacaggccgtacccttcagatcatcaagcag
gaccagaaggaaattggtgatcttggtctcgtggccgtgaagagcaggtccactcaacct
accatgttcaagcccaagcctctcactgtgcggggcgtgcacaagggtctcatgggtatc
gcgacggtgacgggcaacggtgcgcaaggccgcaaagttgatggaatcaagaagcttctc
tcatccgcagacgcagcgggtggaaaggtggatatctccaaggacaagggcggaccgagc
gaggccaagttcttgatccgcttcctcgagggcaagcttcgtctcggcctggctgaaagg
actgttctggtctccctggctcaggctgtcgtgaaccacgaggcttctgtcaaggatctt
gttgcgagccccgaggatgtcgaaaaggccgaggccatgctcaagacggtttacagcgag
ctccccagctacgatgtgatcatccccgccatggttgagcacggcatcatgaacctccgc
gaacactgcaaactgaagcctggtgtgcctttgaagcccatgttggccaagcccacgaaa
gctatcaccgaagtcctggatcgcttcgagaaccagacatttacctgcgaatacaagtac
gacggtgagcgggctcagattcactacgttgccaagtctgcggatgaggagctcagccag
tccatgcccggcgcaacgaaggaggcagccaacggtgtcgccaacatattctccaggaac
tcagaagatctgtccaagaagtatcccgacattctcgccaagctccatacttgggtcaag
cccgacaccaagagcttcgttctcgactgcgaaactgttgcttgggacgttgtggagaag
aaggttcttccgttccagcagttgatgacgcggaagaagaaggacgtcaagattgatgac
gtcaaggtcaaggtgtgcgtgtttgcgtttgatctgctctacctcaacggcgaggctctg
gttgagaagtctctccgtcatcgtcgtgatctgatggtcgaggcctttgcacctgtggag
ggcgagttctcgctcgccacatctatggatggccaggagctcgagcagatccaagagttc
ctggacgagagtgtcaaggcttcctgtgagggtcttatggtcaagatgttggacggcaca
gagagcggatacgagcccagcaaaaggagtcgcaactggctcaagatcaagaaggactat
ctcgccggcattggcgactcgctcgatctcgttgttctgggtgcgtaccacggcaaaggc
aaacgcacgtccgtctacggagccttcctcctcgcctgctacaacccatccggcgaggtc
tacgaaacggtctgcaacattggcaccggcttctcagaggccgtgctcgaggagcttcac
aagcagctgtccgagattgtcattgaccgcccgaagcccttctactcccactcggccggc
ggccagcaccagcctgatgtttggttcgagccccgctatgtctgggaggtcaagacggcg
gatctgacgctcagcccgcgctacaaggccggcgccaaggagggcgtcgatccgtcgggc
gagaagggcatctcgctccgcttcccgcgtttcatcaagattcgcgatgacaagaagccg
gacgaggcgacgagcagccgtcaagtggccgagatgtaccgaaagcaggaatctgtggcc
aagagcaaggggccagctgtcgatgatgactttgagtactag

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