Verticillium dahliae: VDAG_06427 Help Entry VDAG_06427        CDS       T03450                                  Name (RefSeq) pre-mRNA-splicing factor RSE1   KO K12830   splicing factor 3B subunit 3 Organism vda  Verticillium dahliae Pathway vda03040   Spliceosome Brite KEGG Orthology (KO) [BR:vda00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     VDAG_06427  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:vda03021]     VDAG_06427    03041 Spliceosome [BR:vda03041]     VDAG_06427    03036 Chromosome and associated proteins [BR:vda03036]     VDAG_06427 Transcription machinery [BR:vda03021]  Eukaryotic type   RNA polymerase II system    Coactivators     SAGA/TFTC/STAGA complex      VDAG_06427 Spliceosome [BR:vda03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     VDAG_06427  Complex B     VDAG_06427  Complex C    U2 SnRNP specific factors     VDAG_06427 Chromosome and associated proteins [BR:vda03036]  Eukaryotic type   Histone modification proteins    HAT complexes     STAGA complex      VDAG_06427     TFTC complex      VDAG_06427 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CPSF_A Beta-prop_RSE1_2nd Beta-prop_RSE1_1st WD40_WDHD1_1st Motif Other DBs NCBI-GeneID:  20707890 NCBI-ProteinID:  XP_009657100 UniProt:  G2X7G9 LinkDB All DBs Position 8 AA seq 1230 aa AA seqDB search MATTSNMFLYSLTVQPPTNVTLAVLGQFAGTREQHIITASGSRITLVRPDAAQGKVVTVL SHDVFGIIRSMAAFRIAGSNKGKSLVVPRPFLPLPFRGFNYLILATDSGRIAIIEYLPAQ NRFQRLHLETFGKSGIRRVVPGEFLACDPKGRACLIASLEKNKLVYVLNRNSQAELTISS PLEAHKPGVHVLSMVALDVGYANPVFAALETDYTEADQDPTGQAALDVETQLVYYELDLG LNHVVRKWSEPVDNTASLLFQVPGGNDGPSGVLVCGEENITYRHSNQEAFRVPVPRRRGA TEDPSRKRCIVAGVMHKLKGSAGAFFFLLQTEDGDLFKITIDMIEDRDGNPTGEVKRLKI KYFDTIPVASSLCILKSGFLYVASQFGNYQFYQFEKLGDDDEELEFSSDDFPTDPKQSYE AVFFHPRELENLALVESIDSMNPLIDCKVANLTGEDAPQIYTACGNGARSTFRILKHGLE VNEIVASELPGIPSAVWTLKLSRGDQYDAYIVLSFTNATLVLSIGETVEEVNDSGFLTSV PTLAAQLLGGEGLIQVHPKGIRHIRNGQVNEWAAPQHRSIVAATTNEHQVAVALSSGEIV YFEMDSDGSLAEYDEKKEMFGTVTCLSLGEVPEGRLRSSFLAVGCDDSTVRVLSLDPETT LESKSVQALTAPPTSLAVIAMEDSSSGGSTLYLHIGLHSGVYLRTVLDEVTGELTDTRQK FLGPKPVKLFQVTVQGRTCVLGLSSRPWLGYADPITKGFVVTPLNYVDLEWGWNFSSEQC EEGVVGIQGQSLRIFAIEKLGDTLTQKSIPLTYTPRRMVKHPEHPMFYTIESDNNTLPPE LRAQLLADPSVVNGDARTLPPAEFGYPRAKGRWASCISVIDPLSEELQTLQTVDLDNNEA AVSAAIVPFTSQDNESFLVVGTGKDMIVNPRQFTEGYIHIYRFSEDGRELEFIHKTKVEE PPTALLAFQGRLVAGVGKTLRIYDLGQKQMLRKAQADVAPQLIVSLSTQGSRIVVGDVQQ GVTYVVYKPLSNKLIPFVDDTVARWMTCTTMVDYESVAGGDKFGNIFIVRAPEKASQEAD EEGAGLHLTNTRDYLHGTPHRLSLVSHFYSQDVLTSITKTSLVVGGQDVLLWSGISGTIG VFIPFVTREDADFFQTLEQHLRTEDAPLAGRDHLMYRGYYAPVKGVIDGDLCERYTLLPN DKKQMIAGELDRSVREIERKISDIRTRSAF NT seq 3693 nt NT seq  +upstreamnt  +downstreamnt atggcaaccacctcgaacatgtttctctactccctgacggtccagccgccgacgaatgtc acgctggccgtcctgggccagttcgctggaaccagggagcaacacattatcaccgcctct gggtcgcgcatcaccctcgtgcggcctgatgccgcccaaggcaaggtcgtcactgtgctt tcgcacgatgtctttggcatcattcggtccatggccgccttccgtattgccggaagcaac aagggtaagtcgctcgtggtcccccgtcctttcctccccctcccctttcgaggcttcaac taccttattctcgcgacggactcgggcaggattgccatcattgagtacctcccggcgcaa aatcgattccaacgtctccacctggagacttttggcaaatctggcattcgtcgcgtcgtg cctggcgagtttctcgcttgcgatcccaagggtcgagcgtgcttgattgcatcgctcgag aagaacaagctcgtctacgttctcaaccgcaactcccaagccgagctcaccatttcttcg cccctcgaggcccacaagcctggcgtccacgtactgtcaatggtggcactggatgtaggc tacgcgaaccccgtctttgccgcgctcgagacagactacaccgaggccgaccaagatccg acaggacaggctgctttggatgtcgagacccagctcgtctactacgaattggaccttggt ctgaaccacgtagtacgaaaatggtcggagcccgtcgacaatactgcttctctcctcttt caagttcctggcggcaacgatgggcccagtggagtcctcgtctgcggggaagaaaacatt acctaccgacattccaaccaggaggctttccgggtacctgttccacgcaggcgtggcgcg accgaggacccttcgaggaagcggtgcattgttgcgggagtcatgcacaagctgaagggc agcgccggtgccttcttcttcttgcttcagaccgaagacggcgacctcttcaagattact atcgatatgattgaagaccgcgacggcaatcctacgggtgaggttaagcgcctgaagatc aagtacttcgacaccatccctgtggcgtctagcctctgcattctcaagagcggtttcctc tacgttgccagtcagttcggcaactaccagttctaccagttcgagaagcttggagacgac gacgaggagctggaattctcgagtgacgatttcccgaccgatcccaagcagtcgtatgag gctgtgttcttccaccccagggaactcgagaacctggcacttgttgagagcatcgattcg atgaaccctctcatcgactgcaaggtggccaaccttacgggcgaggatgcccctcagatc tacacagcgtgcggtaacggggcaaggagcacattcagaatcctcaagcatggcttggaa gtgaatgagatcgtcgcctcggagcttcccggcattccctcggctgtctggactctgaag ctcagccgcggcgaccagtacgatgcgtacattgtgctatctttcaccaacgccacgctg gtcctgagcattggagagaccgtcgaagaagttaacgactcgggtttcctaacctcagta ccaactctggctgcccaactcctcggtggcgaaggcctgattcaggtccaccccaaaggt atcagacacatccgcaacggtcaggtcaacgagtgggcggcccctcagcatcgatctatc gtcgctgctacaacaaacgagcaccaggtcgccgtcgctctgagctcaggtgaaatcgtc tacttcgagatggactcggacggttccctcgctgagtacgacgagaagaaagagatgttt ggcaccgtcacatgtttgagtttgggcgaagttcctgaaggcaggctccgcagttcattc ctcgcagtcggctgcgacgacagtactgtccgagttctcagccttgaccccgaaaccact ctcgagagcaagtccgtgcaggctttgaccgctcctcccacatcactcgcggtcatcgct atggaggattcttcctctggcggctcaacactttacctacacattggactacactctggc gtctacctcaggactgtgcttgatgaagtgactggcgagctcactgatacgcgtcagaag ttcctcggtcccaagccggtcaaacttttccaggtcacagtccaaggtcgaacttgcgtt cttggcctgagctcacgaccatggcttggctatgccgacccaattaccaaaggatttgtc gtcacgccactgaactatgttgatctggagtggggttggaacttcagcagcgagcagtgt gaggaaggtgtcgtcggcattcaaggacaatctcttcggatcttcgccatcgaaaaattg ggcgacaccttgactcagaagtcaatccctttgacctatacgccaaggcgaatggtcaag catccagaacaccccatgttctacactattgaatcggacaacaacacgctcccaccagag ctgagggcacagctcctcgcagaccccagcgtggtcaacggcgacgcgcggacactgccg ccggcagagtttggatatcccagggccaagggccgttgggcttcttgcatcagcgtcatt gaccctctgtctgaagagctccagacgctacagaccgtcgatctcgacaacaacgaagca gcagtcagtgcggccattgtcccctttacaagccaagacaacgaaagtttcctggttgtt ggtaccggcaaggacatgattgtcaacccccgacagttcactgagggttatattcatatc tatcggtttagcgaggacggtcgagaactcgaatttatccacaagaccaaggtagaggag ccgcccacggccctcctcgccttccagggaagactggtcgctggtgtcggcaagacgttg aggatttacgatcttggtcaaaagcaaatgcttagaaaagcgcaggccgatgttgccccg cagcttatcgtgtcactaagcacacaaggcagtcgaatcgtcgtgggcgatgtccagcag ggtgtgacttatgtcgtctacaagcctctgtccaacaagctgatcccctttgttgatgac acggtcgcgcgctggatgacctgcacgacgatggtcgattacgaatccgtcgctggtggc gacaaatttggcaacatctttatcgtgcgcgcgcctgaaaaggccagccaggaggccgac gaagagggagcgggcctgcatctgacgaacacaagggattatctccacggcacacctcac cgcctgagcctcgtcagccacttttactcgcaggacgttctcacaagcatcaccaagacc agcctcgtggtcggaggtcaagatgtgttgctctggagcggcattagcggcacgattggc gtgttcatccccttcgtcacccgtgaggatgcagacttcttccaaaccctggagcagcac cttcggacagaagacgcgcctctggcgggccgcgaccatctcatgtatcgcggctactat gcgcccgtcaagggcgtcatagacggcgacctctgcgagaggtatacgctgctgccgaac gacaagaagcagatgattgcgggtgaactggaccgctccgtgcgggagattgagaggaag atctcggatattcgcactcggtctgcgttctaa

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