KEGG   Verticillium dahliae: VDAG_06643
Entry
VDAG_06643        CDS       T03450                                 
Name
(RefSeq) WD repeat-containing protein
  KO
K14962  COMPASS component SWD2
Organism
vda  Verticillium dahliae
Pathway
vda03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    VDAG_06643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_06643
   03036 Chromosome and associated proteins [BR:vda03036]
    VDAG_06643
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     VDAG_06643
Chromosome and associated proteins [BR:vda03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     VDAG_06643
    COMPASS/SET1 complex (yeast)
     VDAG_06643
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 20708106
NCBI-ProteinID: XP_009657642
UniProt: G2X911
LinkDB
Position
8
AA seq 382 aa
MASTPMDLDRDAASTNGNSLNITRNTPSSTSRVSDVILSFRPTKLFRREDIKDGRSTPHI
LSLDFDDPGELLMTSESDETIQIYNVREGRHEKSLLSKKYGVKLAKFTHTTSSIIYASTK
QNDQIRYLATHDNSFIRYFEGHEKAVTCLAVHPGTDNFISCAKDDTVRLWDIKSKQWCGQ
LFLNQPTLAAYDPSGNVFGVASPASGSVLLYDCRNFDKAPFGVFDVVDAVRSVDKDFSMK
GWTKLEFSNDGKHILLGTRGNGHFLLDAFDGHLKAYLRKPEGGTRRRAAGESAEGFGADE
GSSPESSGDCSFTVDGRYVLSGSKKDVLVWDTQGTPSDEQVLDPLTVLEDKREAAVLAWN
PRYNFFATADQEVLFWVPDPHA
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggcttccacgccgatggacttggaccgcgacgccgcctcgacaaacggcaactcatta
aacatcacgcgaaacacgcccagtagtacatctcgcgtcagcgacgtcatcttaagcttc
cggccgacaaagctgttccgcagagaagacatcaaagatggccgttccactcctcacatc
ttatcccttgactttgacgaccctggcgagcttctcatgacctcggaaagcgacgaaacg
atccagatctacaatgttcgagagggcaggcacgagaagagcctgttgagcaagaaatat
ggcgtcaagctagccaagttcacccatacaacgtccagcatcatctacgccagtactaag
cagaatgaccagatccgatacctcgcgacccacgacaactccttcatccgttacttcgag
ggccatgagaaagccgtgacgtgcctagcagtacaccctggcacggacaacttcatttcc
tgcgccaaggacgacacagtccgcctctgggatatcaagtcaaagcagtggtgtggtcag
ctctttctcaaccaacctactctggccgcctatgacccctcgggcaatgtctttggcgtg
gcttcgccagccagtggctcggtcctcctatatgactgccgtaactttgacaaggcgccc
tttggagtttttgatgtcgtcgatgctgtccgctctgtcgacaaggacttctccatgaaa
ggctggacgaaacttgagttttcgaacgacggaaaacacatccttctaggaacaagaggt
aacgggcacttcttgctagatgcatttgatggtcacctaaaagcatatctgcgcaagccc
gagggaggaacgaggcgacgggcagcgggagagtcggccgaaggctttggcgcagacgaa
ggatctagcccggaaagcagcggggactgctcattcacagtggacggccggtacgtgctc
agcgggtcgaagaaggatgtcttggtatgggacacgcagggtacgccgtccgatgagcag
gttctagatcctttaacagttctggaggacaagcgcgaggcggccgtgcttgcttggaat
ccccggtacaacttcttcgccacagcagaccaggaggttttgttctgggtgccggacccc
catgcttga

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