KEGG   Verticillium dahliae: VDAG_06928
Entry
VDAG_06928        CDS       T03450                                 
Name
(RefSeq) endoribonuclease YSH1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
vda  Verticillium dahliae
Pathway
vda03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    VDAG_06928
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vda03021]
    VDAG_06928
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_06928
Transcription machinery [BR:vda03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     VDAG_06928
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     VDAG_06928
    U7-dependent histone pre-mRNA processing factors
     VDAG_06928
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B Anti-Pycsar_Apyc1 RMMBL Lactamase_B_2 Lactamase_B_3
Other DBs
NCBI-GeneID: 20708391
NCBI-ProteinID: XP_009654128
UniProt: G2XA25
LinkDB
Position
5
AA seq 837 aa
MAAKRKAAAMAATVTEEPVDPADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLI
QDSVRVGNTSSNPSTQPVYTEADHMNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAM
FLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRVEREQALV
KSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHPDYQKYPIYYASNLARKCMVVYQ
TYVGAMNDNIKRLFREGMAQAEASGDGSGKGGPWDFNYIRSLKNLDRFDDLGGCVMLASP
GMLQNGVSRELLERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRTMANARRGP
GGDGEKFLIPRRCSVQEYSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLS
LNANKSVKAKIFSPKNCEELRIPFKQDKTAKVVGKLATIQPPTKSTLEDGQNATLITGVL
VQNDFKLSLMAPEDLREYAGLNTTTITCKQRLKLSAAGIDLIRWGLEGVFGTVEELPEMH
KKKLSETHNGEDEEADENTNEVTRQEEADEEVASLIAAYLLMGCVTFRYRSDGEVELEWE
GNLLNDSIADAVLTCLYSVESSPAAVKRSGNTHQHDHGPPGHNPHANLSPEERLERFLMI
VENQFGADNVNPVADPKLPVPSKDNAKGEDESEDADPSAMDTSNDGGDKDLDERRRAELE
RLHKLGIPVPGIHIKVDKMEATVWLEDLEVDCVHKAFADRVRRVCERAAEVTAPLWG
NT seq 2514 nt   +upstreamnt  +downstreamnt
atggcggcgaaacgcaaggctgccgccatggcagccaccgtcacggaagagcctgttgat
ccagcggatgaactgatgttcctctgcctcggaggtggaaacgaggtcggccgatcatgt
cacattatccagtacaagggaaagactgtcatgctcgatgccggtcaacatcctgcctat
gacggtcttgccgcactgcccttcttcgacgacttcgaccttagcacagttgatgtgctc
ctcatcagccatttccacgtcgatcatgccgcctcgcttccctatgtcctggccaagacc
aactttaggggcagggtcttcatgacccatcccacaaaggccatttacaagtggctcatc
caggacagcgttcgggtcggaaacacttcatccaacccttcgacgcagcctgtctatacc
gaagcagatcacatgaacacgttccctcaaatcgaagccatcgactaccacactacccac
accatctcctccattcgcatcactccctaccccgcagggcatgtcctcggcgcagctatg
tttcttatcgagatcgcggggctcaaaatattcttcacgggtgactactctcgagaacag
gatcgacatcttgtgtcagcggaggttccaaagggtgtcaaaatcgacgttctcatcacc
gagtcgacatacggtatcgcgtcgcacgtgccgagagtggagagagagcaagctctcgtg
aagtccattactggcatcctaaaccgtggcggccgcgttctgatgcctgtgttcgccctc
ggccgagctcaagaattactgctcattctcgacgagtactggggcaagcaccccgactac
cagaagtaccccatctattacgccagtaacctcgcccgaaagtgcatggtcgtgtatcag
acgtacgtgggagccatgaatgacaatatcaagaggctcttccgcgaaggaatggcacaa
gcggaagcatcaggtgacggcagtggcaagggtggtccgtgggatttcaactacattcga
tcgctgaaaaaccttgatcgattcgatgatctgggtggttgcgtgatgctggccagcccg
ggtatgctgcaaaacggcgttagccgagagctgctggaaaggtgggcgccgaatgacaaa
aacggcgtcattatcaccggttacagtgtcgaaggtaccatggccaagcagatcatgcag
gagccagatcagatccaagccgtgatgagcaggaccatggccaatgctcgtcgcggtccc
ggtggagatggggagaagtttttgattcccaggaggtgcagtgtacaggagtactccttt
gccgcacacgtcgacggaacggaaaaccgcgagttcattgaggaggttgcggctccagtt
gtgatccttgtccacggcgaacagcacaatatgatgcgcctcaagtctaagcttttgtct
ctgaatgcgaacaaatccgtcaaggccaagatcttcagtcccaaaaactgcgaggaactc
cgcattccattcaagcaggacaagacggccaaggtcgtcggcaagctagccacaattcaa
ccgcctacgaagagcacattagaggatggtcagaacgccaccctgattacaggcgtcctt
gtccaaaatgacttcaagctgtctttgatggcacccgaggacctgcgcgaatacgctggt
ctaaataccacgaccatcacctgcaagcaacgcctcaagctcagcgccgccggcattgac
cttattcggtggggtcttgagggtgttttcggcaccgtcgaggaacttcccgagatgcac
aagaagaagctcagcgagacgcataatggcgaggatgaagaagcagatgaaaatacaaac
gaagtcaccagacaagaggaggccgatgaagaagtggcgagcctaatagccgcatacctt
ttgatgggctgcgtaacgttccgctaccgtagcgacggcgaagttgagctcgagtgggaa
ggcaaccttctgaacgacagcattgcggacgctgtactgacctgtctctactcggtggag
agcagccccgctgccgtaaagcgttccggcaacacacaccagcatgaccacggaccccca
ggccataacccacacgctaatctctctcccgaggaacgactcgagcgcttcctcatgatt
gtggagaaccaattcggcgctgacaatgtcaatcctgttgcggatccgaagctgcccgtt
ccttcaaaggataatgccaagggcgaggacgagagcgaggacgctgatccttccgccatg
gatacgtccaacgatggcggggacaaagatcttgatgagcgtcgccgcgcagaacttgaa
cgtctgcacaaactgggcatccctgttccaggaatccacatcaaggttgataagatggag
gctaccgtatggttggaagatttagaggttgattgtgttcacaaggcgtttgcggatcgt
gtgcgccgcgtctgtgaacgtgccgccgaggttacggcgccgctgtggggttga

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