Verticillium dahliae: VDAG_07754
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Entry
VDAG_07754 CDS
T03450
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vda
Verticillium dahliae
Pathway
vda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDAG_07754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_07754
03041 Spliceosome [BR:
vda03041
]
VDAG_07754
03009 Ribosome biogenesis [BR:
vda03009
]
VDAG_07754
03016 Transfer RNA biogenesis [BR:
vda03016
]
VDAG_07754
Enzymes [BR:
vda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VDAG_07754
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
VDAG_07754
Spliceosome [BR:
vda03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
VDAG_07754
Complex C
U4/U6.U5 tri-SnRNP related factors
VDAG_07754
Ribosome biogenesis [BR:
vda03009
]
Eukaryotic type
Pre-60S particles
Helicases
VDAG_07754
Transfer RNA biogenesis [BR:
vda03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
VDAG_07754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
20709217
NCBI-ProteinID:
XP_009654954
UniProt:
G2XC72
LinkDB
All DBs
Position
5
AA seq
1106 aa
AA seq
DB search
MDDLFDVFEGNPRAETSELSEPEAASTGVKPSKKSKKDKSKKRKADGIIKSQPKTEAIDT
VMADVEVAAKNGDESEDPQVDAEDNDGNESNKRRKKDEEAEPVLTDSFQTAESRQVAGAQ
AFAPDEGDSLVLSHNIQHQVALPPDLDHEYIPLSEHKAPDEPARTWNFKLDPFQSLSVAS
IERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFEAMFGDVG
LMTGDITINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETI
ILLPDKVRYVFLSATIPNAFQFAEWIAKIHKQACHVVYTDFRPTPLQNYFFPAGGKGIYL
VVDEKGVFKENNFQKTMQEVEQSKGQDPGDANAKWKGKGNNKKTQKGGGADPKADIVKIV
RMIMTKKFQPVIVFNFSKRECENLAVGLSSLQFNTDNEKAMVRHVFNNAIKSLSDQDREL
PQISNLLPLLERGIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGLNMPAKTVVF
TQVTKWDGVKTRPLTPSEYIQMSGRAGRRGLDSRGIVIMMIDEKMEPDTARGIVVGQQDR
LNSAFYLGYNMILNLLRIEAISPEFMLERCFHQFQNAASVPDLERGLVQLQQEKDNFVIT
DESTVKDYYNIRTQLEQFAMDMRAVIQHPSHCLDFLQPGRLVRIYNPKLQEASLDGTDFG
WGVVANFTKRRAPDSRKGEPEYPPQESIMIDVMLPISPDSDEITQGFNITTEMPKNVYPE
STSNSPARFEIVPCLLTCLKSISQIRVFMPKDINSQASKDQVRRSLLEVTRRFPDGLPIL
DPMENMGIKDESFIKLLRKIEVLESRLLTNPLHGSPLLPELYLQYRAKVKLGEEIKEKKK
GIAKAHSISQMDELKARKRVLRRLGFLNESEVVQLKARVACELSSTEGHELILAELLFDR
FFNELAPETIAAVLSCFVLDEKLEAQPLKEELDKPFRAILAKARQVAKVSIESKMDINEE
EFVGKFKWQLMETVHAWSNEKSFADICKMTNAYEGSLIRLFRRLEELLRQMAQGAKVMGS
EELQVKFEASLNKIRRDIVAAQSLYL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctcttcgatgtcttcgagggcaatcctcgggcagagacttcagaactcagc
gagcccgaggccgcttctaccggcgtcaagccatccaagaaaagcaagaaggacaagagc
aagaagcgcaaggcggatggcattataaagtctcagccaaagaccgaggccattgacacc
gtaatggcagacgtcgaggttgctgcaaagaacggcgatgaatcggaggatccacaggtt
gacgccgaggacaacgatggcaacgagagcaacaagcgccgcaagaaggatgaagaagct
gagcccgtcttgaccgacagcttccaaacggccgagtcgcgtcaagtggctggcgcacaa
gcatttgcgcctgacgagggggattccttggtcctgtcccacaacatccagcatcaagtc
gcgctacctcccgatctcgaccacgagtacatcccgctctccgaacacaaagccccggac
gagcccgccaggacatggaacttcaagctcgacccttttcaaagcctttcggttgcgtcc
attgagcgtgatgagagtgttcttgtctctgcgcataccagtgccggcaagacggttgtt
gccgaatacgccattgcgcagtgcctcaagaggaaccagagagtcatctacaccagtccc
atcaaggccctcagcaaccaaaagtaccgggactttgaagccatgtttggcgatgtcggc
ctcatgacgggcgacattactatcaaccccaccgccagctgtcttgtaatgacgacggag
attttgcggtctatgctgtaccgtggctctgagattatgcgcgaggtggcttgggttgtc
tttgacgagattcactacatgcgtgataagacccgtggtgtcgtatgggaggagaccatt
attttgctgcctgacaaggtccgatatgtcttcttgtcagccactattccgaatgccttc
cagttcgccgagtggattgccaagatccacaagcaggcctgccacgtcgtttatacggat
ttccgaccaacacccttacagaactactttttcccagccggcggcaagggaatctacctc
gttgttgacgagaagggagtcttcaaggagaacaactttcaaaagacgatgcaagaggtt
gagcaatccaagggtcaagatcccggcgacgcgaacgccaagtggaagggcaagggcaac
aacaaaaagacgcagaagggcggcggcgccgatcccaaagccgacattgtcaagattgta
cgcatgatcatgaccaagaagttccagcccgtcatcgtcttcaactttagcaagcgagag
tgtgagaatcttgctgttggcttgtcgagcctacagttcaataccgataacgaaaaggca
atggttcgccacgtcttcaacaatgctatcaagagtttgtccgatcaggatcgtgagctt
cctcaaatctctaatctcctgcctctactcgagcgcggcatcggcgtccatcactctggg
ctcctgcccatcctcaaggagacgattgagatcctcttccaggagtccctgatcaaggtt
cttgttgcaactgagacgttctcgattggtctcaacatgcctgcaaagactgttgtcttc
acacaggtgaccaaatgggacggcgtcaagaccaggcctcttacaccatctgaatatatt
cagatgtctggacgtgccggccgtcgtggtcttgattcccgtggtatcgttatcatgatg
atcgacgagaagatggagcctgatacggcccgcggcattgttgtaggtcaacaggatcgt
ctcaattcggccttttacctgggttataacatgatactcaaccttttgcgcatcgaagcc
atctcacccgagtttatgcttgagcgctgcttccaccagtttcagaatgccgctagcgtt
ccagaccttgaacggggactcgtgcaacttcaacaggagaaggacaactttgtcatcacg
gatgaatcgacggtcaaggattattacaacatcagaacccagcttgagcagttcgccatg
gatatgcgggctgtcattcaacatccgtcacactgtctcgactttttacagcctggccgc
cttgtccgcatctacaacccgaagctccaggaggctagcctcgacggaacggactttggc
tggggtgtcgttgctaattttaccaagcgccgcgctcccgatagtaggaagggtgagccc
gagtatccgccgcaagagtccatcatgattgatgttatgcttcccatctcgcctgatagc
gatgagatcacacagggcttcaacatcacgaccgagatgcccaaaaatgtttacccggag
tcgacttcgaatagcccggcccgttttgagattgtcccttgcctcttaacctgcctgaag
agcatcagtcagatccgcgttttcatgcctaaggatatcaactcgcaagctagcaaggac
caggttcgcagatctctactcgaggtcacacgtcgttttccagatggcctaccgatcctc
gaccccatggaaaacatgggcatcaaggacgaatcctttatcaagctcctgcgcaagatt
gaggttctcgagtctcgccttctgacgaacccactccacggatcgccccttttaccggag
ctctacctgcaatatcgcgccaaggtcaagctcggcgaagagatcaaggaaaagaagaag
ggcatcgccaaagcacacagtatatcacagatggacgaactcaaggctcgcaagcgtgtt
ctacgtcgcctcggcttcctcaacgagagcgaagttgtgcagctcaaggcccgcgtcgcc
tgcgaactgtcgtctaccgaaggccatgagctcatcctcgctgaacttcttttcgacagg
ttcttcaacgaactggcgcctgagacgattgctgccgtgctaagttgtttcgtgctcgat
gaaaaacttgaggctcagccgctcaaggaggagcttgacaagccgttccgtgctattctt
gccaaggctaggcaggtcgccaaggtcagcatcgagagcaaaatggatatcaacgaagag
gagtttgtcggaaaattcaagtggcaactgatggagacggtgcacgcatggtccaacgag
aagtcttttgccgatatctgcaaaatgaccaatgcctacgagggctctctcatccgtcta
ttccgccgcctcgaggagctacttcgccaaatggcacagggcgccaaggtcatgggctct
gaggagctacaagtcaagttcgaggcgagtttgaacaagattcgccgcgacattgttgca
gcgcagagcttgtacctgtaa
DBGET
integrated database retrieval system
