Verticillium dahliae: VDAG_07985
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Entry
VDAG_07985 CDS
T03450
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vda
Verticillium dahliae
Pathway
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_07985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vda03041
]
VDAG_07985
Enzymes [BR:
vda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VDAG_07985
Spliceosome [BR:
vda03041
]
Complex C
Other components
Step II factors
VDAG_07985
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
AAA_30
T2SSE
nSTAND3
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
20709448
NCBI-ProteinID:
XP_009651046
UniProt:
G2XCV3
LinkDB
All DBs
Position
2
AA seq
1190 aa
AA seq
DB search
MDDLLELELLSLVSKVTSELQNHMGVSDKTLAEFIIAQRVECADTGLAGFQKKLASLGAD
FPPSFVESIDRLVLAMHPKLKGKKTNGADDAQQHHHHRSAEEKEQIFKGLAVPDKEVGAD
AFDDTFALLEGLEGRARQEKTSARKRSRSPEDDRESRRKRRDRSRSKERRRRRRSRSRSL
DDEHGPALKQRRSRRRERDYNDYEDDDRLRRPPPTELDDAPQIQKVYPGRVTGVKDFGAF
VNLQGVRGKSDGLVHVSQISEQRVNHPSDILSRDQPVWVKVISVDGNRIGLSMKQVDQET
GMDLVPQARISSGANMEALGGGGGDRNGNMFDAGVMPPPNQRPQRQKKRMTSPERWEIRQ
LIASGVAKASDYPDLNEDYNATLRGDGEMELEEEVDIEVREEEPPFLAGQTKQSLELSPI
RVVKAPDGSMNRAAMSGTALAKERKELKQQEAEAAAQEENKVDLSTQWNDPMADPDKRKF
ASDMRNARQQAPKPDAVPEWKRAVQPKDQSFGKRTDMSMKQQRESLPVFAFRQKFLDAVN
DHQVMVVIGETGSGKTTQLTQYLAEGGFANHGVIGCTQPRRVAAMSVAKRVAEEVGCPLG
EEVGYTIRFEDRTSPATRIKYMTDGMLQREILVDPDLKRYSVIMLDEAHERTISTDVLFA
LLKKTMARRKDLKVIATSATLDADKFSSYFNGCPIFTIPGRTFPVEVLYSREPESDYLDA
ALVTVMQIHLTEPPGDILLFLTGQEEIDTSCEILFERMKALGPNVPELLILPVYSALPNE
MQSRIFDPAPPGCRKVVIATNIAETSITIDNIYFVVDPGFVKQNAYDPKLGMDSLVVTPI
SQAQANQRAGRAGRTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGIND
LLHFDFMDPPPINTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPSLAKVLIMSIDM
NCSAEMLIIVAMLNLPNVFYRPKEKQTQADQKKAKFHDPAGDHLTLLNVYNSWKQSSYSS
PWCFENFIQARSMKRAKDVHDQLVKIMDRYRHPVVSCGRNTQKVRQALCSGFFRNAARKD
PQEGYKTLTEQTPVYLHPSSALFGKQAEWVIYHTLVLTTKEYMHCSTSIEPKWLVEAAPT
FFKVAPTDKLSKRKKAERIQPLYNKFAGEDDWRLSAQKKGGRSGGGGTWG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccttttggagctcgagctcctgtcgctcgtctccaaggtcacatcggaactg
cagaaccacatgggcgtctccgacaagaccctcgccgagttcatcatcgcccagcgcgtc
gagtgcgccgacacgggcctcgccggcttccagaagaagctcgccagcctgggcgccgac
ttcccgcccagcttcgtcgagagcatcgaccgcctcgtgctggccatgcacccgaagctc
aagggcaagaagacgaacggcgcagacgacgcgcagcagcaccaccaccaccgcagcgca
gaggagaaggagcagatcttcaagggcctggccgtccccgacaaggaggtcggcgcagat
gctttcgacgacacgtttgcgctgctggaggggctcgagggccgcgcgcggcaggagaag
acgtcggcgaggaagaggagtcgcagccccgaggacgaccgcgaatcccgacgcaagagg
cgagacaggtcgagatcaaaggagaggcggaggcggcggcggtcaagatcgaggtccctc
gacgacgagcatggccctgcgctcaagcagaggagaagcaggaggcgggagcgcgactac
aacgactacgaggacgacgacaggctgcggaggccgccccctacagagctggacgatgcg
ccgcagatccaaaaggtgtatcccgggcgggtcaccggcgtcaaagatttcggagccttt
gtcaaccttcaaggcgttcgtggcaagtcggatgggctggtgcacgtttcgcagatctca
gagcaacgggtcaaccacccgtccgatatcctcagccgagaccagccggtctgggtcaag
gtcatcagcgtcgatggcaatcgaatagggctttcgatgaagcaggtcgaccaggagaca
ggaatggaccttgttccacaagcaaggatatcatccggcgccaacatggaagccttggga
ggcggaggaggagacaggaatggcaacatgttcgacgctggggtcatgccaccaccaaat
caacggccgcagcggcagaagaagaggatgacttcacctgaaaggtgggagatccggcaa
ctgatcgcatcaggcgtcgcaaaggcctctgactaccccgacctcaacgaagactacaat
gcaacgttgcgtggtgatggcgagatggagctcgaggaggaggtcgatatcgaggttcgc
gaggaagagcccccgttcctggccggacagacgaagcagtctcttgagctgtcgccgatt
cgcgtcgtgaaagcaccggatggctcgatgaatcgcgcagccatgtcaggcactgcactc
gccaaggaacggaaggagttgaagcagcaagaagcagaggctgcagcacaagaggagaac
aaggttgatctctctacacaatggaacgaccccatggccgaccccgacaagcgcaagttt
gccagcgacatgagaaacgcgagacagcaagcgcccaagcccgatgccgtcccggaatgg
aagcgtgctgtgcagcccaaagaccaatcgtttggaaagaggacagacatgagcatgaag
cagcagcgggagtctctgcctgtctttgctttccgccaaaagtttctcgacgccgtcaac
gaccaccaggtcatggttgtcattggagagacaggctctggcaagactactcagctcaca
caatatctagctgaaggtggtttcgccaatcatggtgtcattggatgtacgcaaccgcgt
cgtgtggctgccatgtctgtcgccaaacgtgtggcggaagaagtcggctgccccttgggc
gaagaggttggctacaccattcgatttgaggaccggaccagcccggcaacgaggatcaag
tacatgacggatggtatgcttcagcgtgagatcttagtcgaccccgatctcaagcggtac
tcggtcatcatgcttgacgaggcgcacgaacgtaccatctcgactgatgtgttgtttgct
ctgctgaagaagacgatggcccgccgcaaggacctgaaggtcattgccacatcagcaact
ctcgacgccgataaattctcctcgtacttcaacgggtgtcccatctttacgatccctggt
cgaaccttccccgtcgaagtcttgtattctcgcgaaccggaatccgactacctcgacgca
gctctggtcacagtgatgcagattcacctcactgagccgcctggagacatcttgctattt
ttaactggacaggaggaaatcgacacatcgtgcgagattctgttcgagcggatgaaagct
ctagggccaaatgtacctgagctgctgatccttcccgtttattcagctttgccgaacgag
atgcagagtcgcattttcgatccggcaccgccgggctgccggaaggtcgtcatcgccacc
aacatcgctgagacatccatcaccatcgacaatatctactttgtcgttgaccccggattt
gtcaagcagaacgcctacgaccccaaactcggcatggactctcttgtcgtcacccctatt
tcacaggctcaggccaaccagagagctggccgagcagggcgtaccggccccggcaagtgc
ttccgtctgtacaccgaagcagcctatcaatctgagatgctgcccacaacgattcccgaa
atccagcgtcaaaacttgtcacacacgattctcatgctcaaggctatgggcatcaacgac
ttgctgcattttgactttatggacccacctccaatcaacaccatgttgacggctcttgaa
gagctgtatgcgcttagtgcgctagacgacgaaggtcttctgacacgtctcggccgcaaa
atggccgacttccccatggagccttcgcttgcgaaggtcctcatcatgtccatcgacatg
aactgctcagccgagatgctcatcatcgtcgcaatgctcaacctgcccaacgtgttttac
cgtcccaaggagaagcagacacaagccgatcaaaagaaggccaagttccacgaccccgcg
ggcgaccacctgaccctcctcaacgtctacaactcctggaagcagtcgagctactcaagt
ccctggtgcttcgaaaacttcatccaggcccgctcaatgaagcgagccaaagatgtccac
gatcagcttgtcaagattatggaccgataccgccaccctgtcgtcagctgcggacgcaat
acacagaaagtccgacaggcgctctgctcgggcttctttcgcaacgccgcgcgcaaggat
ccgcaggaggggtacaagacgctcactgagcagacgccggtttacctgcacccgagctcg
gccttgttcggcaagcaagcagagtgggtgatttatcacacgctggtactcacgacgaaa
gagtacatgcattgctcgacatctattgagcccaagtggctagtggaggcggcaccgacg
ttcttcaaggtggcgccgacggacaagctgtcgaagaggaagaaggcggagaggatccag
ccgctgtacaacaaatttgccggggaggacgattggcgtctcagtgcgcagaagaagggg
ggacggtctggaggcggtggtacctggggataa
DBGET
integrated database retrieval system
