Verticillium dahliae: VDAG_08342
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Entry
VDAG_08342 CDS
T03450
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
vda
Verticillium dahliae
Pathway
vda03030
DNA replication
vda03410
Base excision repair
vda03420
Nucleotide excision repair
vda03430
Mismatch repair
vda03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VDAG_08342
03410 Base excision repair
VDAG_08342
03420 Nucleotide excision repair
VDAG_08342
03430 Mismatch repair
VDAG_08342
03440 Homologous recombination
VDAG_08342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vda03032
]
VDAG_08342
03400 DNA repair and recombination proteins [BR:
vda03400
]
VDAG_08342
Enzymes [BR:
vda01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VDAG_08342
DNA replication proteins [BR:
vda03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
VDAG_08342
DNA repair and recombination proteins [BR:
vda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
VDAG_08342
MMR (mismatch excision repair)
DNA polymerase delta complex
VDAG_08342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
RNase_H_2
divDNApol
DNA_pol_B_exo2
DUF2614
DUF1948
Motif
Other DBs
NCBI-GeneID:
20709805
NCBI-ProteinID:
XP_009658362
UniProt:
G2XDW0
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MATSVLPQKRVLGETSNARRNIPSSPGSKKRKVEPFASSPVTRFAGSQRNPRNPLNSSQP
KSAFESEVLEKLSQDISELKQNNSEKDQAWERPPLDDFNPEKTTIVFQQIEAEEGTLHGG
RATVKLFGVTEAGHSVMLHVTDFKHYLYIAAPVSFQPEDCNNFRAYLETQVAQHQPVIHS
VALLMRENIYGFQGNVKNPYLKITVNDPKHIGKVRSTIEAGNANWKGLWKGVDGGVMTFD
NIQYVLRFMVDCKLQGMSWVEAPAKSYKVMSSSLRQSNCQIEAEISYLDLVAHKPEGEWS
KMAPLRILSFDIECAGRKGIFPEANHDPVIQIANVVTRYGEKKPFIRNVFCLDTTSSIVA
TQVLEFDKEEKMLKEWQKFLQSVDPDLIIGYNIANFDFPYLLDRAKHLKVAGFEYWSRIP
SMPSRAKETSFSSKQIGNRDSKSTNTNGRLQLDLLQLVQRDHHLRSYTLNSVCSQFLGEQ
KEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGAPFNM
LLARGQQVRFISQLFRKALEQKLVIPNMKSEASDEQYEGATVIEPTRGYYDVPIATLDFA
SLYPSIMQAHNLCYTTIVDKKAIEKLGLKKDEDYIVTPAGNTFVTAKQRKGLLAQILEEL
LAARKQAKRELAVETDPFKKAVLNGRQLALKVSANSVYGLTGATTGKLPCLEIASSTTSF
GRQMIEKTKEEVEAKYTIANGYSHDAQVIYGDTDSVMVKFGTKDLAEAMKLGEEAAGFVS
SKFVKPIKLEFEKVYFPYLLINKKRYAGLYWTKPEKYDKMDTKGIETVRRDNCLLVQTVI
EKVLRMILIDQDVQGAQEYVKDMIADLLQNKVDMSKLVITKALTKDDYSAKQAHVELAQR
MKKRDAGSAPGLGDRVAYVMIKGAAGAKNYEKSEDPIFVLENNVPIDTRYYLDNQLAKPL
GRIFEPILGETKANSLLTGAHTRTIAVAAPMVGGLMKFAKKTQTCMGCKKPLTSKQEAEG
AVCSDCAPRVGELYKKTLDRVSDLEVRFGRLWTQCQRCQGSIHCEVICSSKDCPIFYMRM
KAKKDLEDAGKELKRFDFDQAAIW
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgtctgtgctgccccaaaaacgtgtgctcggggagacctcgaacgcccgccgc
aacatcccctcgtccccaggttccaagaagcgcaaggtcgagccctttgcctcctcaccc
gtgacgcgcttcgcaggaagccaaagaaacccgagaaaccctctgaactcgagccagccg
aagagcgcattcgagtccgaagtccttgagaagctgagccaggacatttccgaactgaaa
cagaacaacagcgagaaggaccaagcatgggagcgaccgccgctcgacgacttcaaccct
gaaaagaccaccattgtctttcaacagatcgaggctgaggagggtacattgcatggaggc
cgtgccaccgtcaagctgtttggcgtcaccgaggctggtcactcggtcatgctgcacgtt
accgactttaagcactatctctacattgccgcccccgtctccttccagcccgaggactgc
aacaactttagggcgtatctggagacgcaggtcgctcagcaccagcccgtcattcattcc
gtggcccttctcatgcgcgaaaacatctatggcttccagggcaatgtcaagaacccgtat
ctcaagatcacggtgaacgatcccaagcacattggcaaagtgcggtctactatcgaggcc
ggcaatgccaactggaagggcctctggaagggcgttgacggtggcgtgatgacgtttgac
aacatccaatatgtcctgcgcttcatggtggactgcaagctacaaggcatgtcctgggtc
gaagcaccggcgaaatcctacaaagtgatgtccagctcgctacgacagtccaactgccag
atcgaggccgagattagctatcttgaccttgtcgcacacaaaccggaaggcgaatggtca
aagatggcgccgctccgcatcttgtcctttgatatcgagtgtgccggtcgcaagggcatt
ttcccagaggcgaaccacgaccccgtcatccagatcgcaaacgttgtcacaagatacgga
gagaagaagcccttcattcgcaatgtgttctgtctggacacaaccagctccattgttgcg
acacaagttctcgagttcgataaggaagaaaagatgttgaaggagtggcaaaagttcctc
cagagcgtcgacccggatctcatcatcggatacaacattgccaacttcgatttcccgtat
ctgctcgaccgcgcgaaacatctcaaggtcgcaggcttcgagtactggtcccgtattccc
agtatgccctcgagagccaaagaaacgagcttctccagcaagcagattggcaaccgcgac
tcgaagagcaccaacaccaacggcaggttgcagctcgatctcctgcaactagtgcagcgc
gatcatcacctgcgaagttatacgctcaattcggtgtgctcccaattcttgggcgagcag
aaggaggacgtccaccacacaatgattacagaactcttcaacggtacccctgaatcgcga
cgtcgactggcgctgtactgtctgaaggacgcctacttgccacaacgcctcatggacaag
ctctcttgcctcgaaaactacacagaaatggcaagagtcacaggcgctccgttcaacatg
ctgctcgctcgaggccagcaggtgaggttcatcagtcagcttttccgcaaggcgctggag
cagaagctggtgattcccaacatgaagtccgaggctagcgacgaacagtacgaaggtgca
acggtcattgagccgacaagaggctactatgacgttcccattgcgacgctcgatttcgca
tctctataccccagtatcatgcaggcgcacaacctttgttatacgaccattgtagataag
aaggccatcgagaaacttggcctcaagaaggacgaggattacatcgtcactcctgcgggc
aacacctttgttacagccaagcaacgaaagggtctcctcgcacaaattctcgaggagttg
ctggctgcccgaaagcaggccaagcgcgagctcgcagtcgaaactgatccattcaagaag
gctgtgctgaacggtcgacaactggctttaaaggttagcgccaactcggtgtacggtctc
acgggtgccacaacgggcaagctgccgtgtctggaaatcgccagtagtaccacaagtttt
ggtcggcagatgattgaaaagacaaaggaggaggtggaggccaagtacaccatcgccaac
gggtattcgcacgacgcgcaggtcatctacggtgacacggattccgtcatggtcaagttt
ggcaccaaggacctggccgaagcaatgaagctgggcgaggaagccgccggctttgtgtcc
tccaagtttgtcaagccgatcaagctcgagtttgaaaaggtctatttcccgtacctgctc
atcaacaagaagcgctatgctggtctctactggaccaagccggagaagtacgacaagatg
gacacgaagggtatcgagacggttcgtcgagacaactgcttgttggtccagacggtcatt
gaaaaggtgctgcgcatgattctcatcgaccaggacgtccaaggcgcgcaagaatatgtc
aaagacatgatcgccgacctgctacagaacaaggtggacatgtcaaagcttgtcatcacc
aaggcgctgacaaaggacgactactcggcaaagcaggcacacgtggaactcgcccaacgg
atgaagaagcgcgatgcaggttcggctcccggactgggcgaccgtgtggcgtacgtcatg
atcaagggcgcggcgggagcgaagaactatgaaaagtcggaggaccccatcttcgtgctg
gagaacaatgtgccgatcgacacgaggtactacctggacaaccagctggcgaagccgctg
ggtcgcatcttcgagccgatcctcggagagaccaaggccaactcgctcctgacgggcgcg
cacacgcgaacgattgccgtggcggcgcccatggtcggaggtctcatgaagttcgccaag
aagacgcagacgtgcatgggctgcaagaagccgctgacgagcaagcaagaggccgagggc
gctgtgtgctcagactgcgcgccgcgtgtgggcgagctgtacaagaagacgctggaccgt
gtatctgacctcgaggtgcgctttgggcgcctctggacgcagtgtcagcggtgccagggc
agcatccactgcgaggtcatctgcagcagcaaggactgtccgattttctacatgcgaatg
aaggcgaagaaggatctggaggatgcgggcaaggagctcaagcgtttcgatttcgaccag
gcggccatctggtaa
DBGET
integrated database retrieval system
