KEGG   Verticillium dahliae: VDAG_08833
Entry
VDAG_08833        CDS       T03450                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
vda  Verticillium dahliae
Pathway
vda03013  Nucleocytoplasmic transport
vda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDAG_08833
  09122 Translation
   03013 Nucleocytoplasmic transport
    VDAG_08833
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_08833
   03041 Spliceosome [BR:vda03041]
    VDAG_08833
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     VDAG_08833
Spliceosome [BR:vda03041]
 Complex C
  Other components
   EJC/TREX
    VDAG_08833
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    VDAG_08833
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR3_2nd EIF3I Beta-prop_RIG_2nd WDR55 Beta-prop_Aladin ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_SCAP Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_EIPR1 WD40_RFWD3 CFAP251_N Beta-prop_VPS8 Tricorn_2nd
Other DBs
NCBI-GeneID: 20710296
NCBI-ProteinID: XP_009649445
UniProt: G2XFA1
LinkDB
Position
1
AA seq 339 aa
MAPLSRPKTSLPRERFTTYLKDIKIQTYQDPSFGSSSRNSGSSRSIWSISWNPTGSLIAT
GADRILRVWNPEKPVARFSTELKGHTAAIAKVAFNPAKDAELCSISFDGVAKFWDVRSKT
CTNEVKGLGEAFTLAWAPDGETLVVGNKADTLFLLSPTQTAPLSTHTQDVQTNQVSFCWS
GEKVFLTTGEGRVRILSYPDFQPLLHREGPDGAIEFTLDGHASQCLSAEMQPTARYLATG
GYDSIIALWDTTNWICQNTVTTSVGPVRSISFTFDGSYCVGGSEQGAGLDVFHTETGDTI
HTIKTSDPSPVVAWAPTRYYLAFIDQNALRIAGIDTERK
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcacccctctctcgcccgaagacaagtctcccaagggaacgattcaccacgtacttg
aaagatattaagatacaaacgtatcaggaccccagcttcggctccagttctcgcaacagc
ggctcatcacgcagcatatggtccatttcttggaacccaactggttccctcattgccacg
ggagcggataggatacttcgtgtctggaatcctgaaaagcccgttgcacgcttctcgact
gagctcaaggggcacacagctgcgattgccaaggttgccttcaatcctgccaaggatgca
gagctctgcagcatcagttttgatggcgtggccaaattctgggacgttcgaagcaaaacc
tgcaccaacgaagtcaagggcctcggtgaagccttcacgctggcatgggccccagatggc
gagaccctcgtggtaggcaacaaagcggacacgctctttctactgtctcctacccaaacg
gcacccttgtccactcacacgcaagatgtgcagacaaaccaggtatcgttctgttggagt
ggagagaaggtcttcctgaccactggcgagggtcgtgtccgtattctttcgtatcccgac
tttcagccactacttcaccgcgagggcccagacggggccatcgagttcacgctggatggc
cacgcttcacaatgcctctcggccgagatgcagccgactgctcgttatctagcgacaggt
gggtatgattccatcattgcgctctgggacacgacaaactggatctgccagaacacggtc
accacgtctgtaggccctgtccgaagcatcagcttcacgtttgacggcagttactgtgtg
ggaggaagcgaacagggtgctggcctcgatgttttccacacggagacgggggatactatc
cacaccatcaagacgagcgatcccagcccagtggtggcgtgggcgcctacgcgctattac
ctcgccttcatagaccagaatgcccttcgcatcgctggtatcgatacagaacggaaatag

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