Verticillium dahliae: VDAG_10019
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Entry
VDAG_10019 CDS
T03450
Name
(RefSeq) RNA polymerase II transcription factor B subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
vda
Verticillium dahliae
Pathway
vda03022
Basal transcription factors
vda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VDAG_10019
09124 Replication and repair
03420 Nucleotide excision repair
VDAG_10019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vda03021
]
VDAG_10019
03400 DNA repair and recombination proteins [BR:
vda03400
]
VDAG_10019
Transcription machinery [BR:
vda03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VDAG_10019
DNA repair and recombination proteins [BR:
vda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VDAG_10019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
DUF6285
PRO8NT
Glyco_hydro_11
Motif
Other DBs
NCBI-GeneID:
20711482
NCBI-ProteinID:
XP_009654071
UniProt:
G2XIN7
LinkDB
All DBs
Position
4
AA seq
547 aa
AA seq
DB search
MAVPSGRAAFKKKDGVLTLSADQMHVTWTPWPGTGTPTVSLPLPNIANLQQTPDTAAKVM
LRIIEKAPDATEQTPYSFHFTSPDARAEANAVKDVLSKLLQDLRSGDPNLPKLASSTGTP
NANGEGNGGVSASMAFASSVNSKPAPPRWFDDGQLKSDIELQQSLMKADRNLYQTYVDAR
ATKPDSISDAAFNSQFWSTRTNLLRAHAIEMNQKRGSYNVLSTIKPRTEGEELKLNISVE
QVQLIFSQHPLIKRLYNENVPKITEAEFWSRFFLSKLSRTLRGDKVQDEKKEGIVRDPLF
DNHDESENTLGFQSRIMAQSVPNIINVEANEENQGGFRSGNQADFEMRPRKNVLIVKTLN
SLSEKIMANVAPSDIEAEQTNGDEDATFGQLALRDLQGDVEEQRVILNVKEQSRFFSKHE
DTQSANARIFSRQVAADVLSSVRRELRLMATDNSGALDLHAGLSVDDQSDSDEETRKPPR
VGSRATRKLAEDDVMAGVKRRRMEKYGTGSDATDLMGLQPELAERCQLTHATTVEFLHQF
WTAFSLR
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgccttctggtcgggcagccttcaagaagaaggatggcgtcttgactctgtct
gctgatcagatgcacgtcacctggacaccatggcccggcaccggcacacccaccgtgtct
ctgcctctccccaacatcgcaaacttgcaacagaccccagataccgcggctaaggtcatg
ctgcggattatagaaaaggcaccagatgcgactgaacagacaccatactcattccacttt
acgtctccagatgcgcgcgccgaggccaatgccgtgaaagatgtcctgtccaaattattg
caggacctgcgatcaggtgacccaaacctaccgaagctggcttcgtccacgggcacgccc
aacgctaatggcgagggcaacggcggcgtctctgcctccatggcctttgcgagctcggtc
aactcaaagccagccccgccacgctggttcgacgacggccagctcaagagcgacattgaa
cttcaacagtctctgatgaaggcggaccgcaatctctaccagacatatgttgatgcccgc
gccaccaagccagattccatctctgatgcggctttcaactcccaattctggtccacacgc
acaaatctgctgcgagcccacgctatcgagatgaaccagaagaggggctcctacaacgtc
ttgtcaaccattaagccacggacagagggtgaggagctcaagctgaacatcagcgtcgag
caggtgcagctcattttcagccaacacccactcatcaagcgtctctacaatgaaaacgta
cccaagatcaccgaggccgagttctggtcacgcttcttcctcagcaagctgtcacgaacc
ctgaggggtgacaaggtgcaggacgagaaaaaggagggcatcgtccgagacccccttttt
gataaccatgatgagagcgaaaacacactgggctttcaaagcagaatcatggcgcaaagc
gtgccgaatatcatcaacgtcgaagccaatgaagagaaccaaggtggttttcgaagcggc
aaccaggccgactttgagatgcggcccagaaagaacgttctcatcgtcaagacgctcaat
agtttgagcgaaaagatcatggcaaacgttgccccatccgacattgaggcagagcagacg
aacggggacgaagatgctactttcggccagctggcgctgcgagacttgcaaggcgatgtc
gaggaacagcgcgtgattctcaacgtcaaggagcagagccgcttcttctccaagcacgag
gacacgcaatctgcgaatgctcgcatcttttccaggcaggttgccgccgacgtcttgtcc
agcgtccgtcgcgagttgcgtcttatggcgacggacaattctggcgcactagacctgcac
gctggcctcagcgttgatgatcaaagtgacagcgacgaagaaacacgaaagcccccgcgc
gtcggttcccgagcaacgagaaagttggccgaagacgatgtaatggccggcgtcaaacgg
cggcgcatggaaaagtacggcaccggctcagacgccactgacctgatgggactgcagcct
gagcttgctgagcgctgccagttgacgcatgccacgacggtggaattcctacaccagttc
tggaccgctttttctcttcggtga
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integrated database retrieval system
