Verticillium dahliae: VDAG_10320
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Entry
VDAG_10320 CDS
T03450
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
vda
Verticillium dahliae
Pathway
vda03018
RNA degradation
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_10320
09123 Folding, sorting and degradation
03018 RNA degradation
VDAG_10320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_10320
03041 Spliceosome [BR:
vda03041
]
VDAG_10320
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VDAG_10320
mRNA degradation factors
5'-3' decay
Lsm complex
VDAG_10320
Spliceosome [BR:
vda03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
VDAG_10320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
DUF6897
Motif
Other DBs
NCBI-GeneID:
20711783
NCBI-ProteinID:
XP_009658084
UniProt:
G2XJI8
LinkDB
All DBs
Position
Unknown
AA seq
140 aa
AA seq
DB search
MADRGSHRGGGGGGGRGGGHRGRGGGGGVGRGGHGGGQGGAGGDRERPKKENILDLGKYM
DKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMRDDEGKENTRSLGLVVARGTLLVL
VSPVDGSEPIANPFAQPEED
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagaggctcgcatcgtggagggggcggcggcggtggccgtggaggaggtcat
cgagggaggggaggcggcggcggcgtcggtcgcggcggacacggtggaggccagggtggt
gctggcggcgaccgcgagaggcccaagaaggagaacatcctcgacttgggcaagtatatg
gacaagaagattaccgtcaagttcaatggcggtcgcgaagtgactggcacgctcaaggga
tacgacgctctgatgaatcttgtgctcgatgacgtcgaagaagtcatgagagatgacgag
ggaaaggagaacacccgatctctcggcctcgtcgtggcacgcggtacactcttggtcctc
gtcagccctgttgacggaagcgagccgatcgccaaccctttcgcccagccagaagaagat
tga
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integrated database retrieval system