KEGG   Verticillium dahliae: VDAG_10320
Entry
VDAG_10320        CDS       T03450                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
vda  Verticillium dahliae
Pathway
vda03018  RNA degradation
vda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDAG_10320
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDAG_10320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_10320
   03041 Spliceosome [BR:vda03041]
    VDAG_10320
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VDAG_10320
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     VDAG_10320
Spliceosome [BR:vda03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    VDAG_10320
SSDB
Motif
Pfam: LSM DUF150_C DUF6897
Other DBs
NCBI-GeneID: 20711783
NCBI-ProteinID: XP_009658084
UniProt: G2XJI8
LinkDB
Position
Unknown
AA seq 140 aa
MADRGSHRGGGGGGGRGGGHRGRGGGGGVGRGGHGGGQGGAGGDRERPKKENILDLGKYM
DKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMRDDEGKENTRSLGLVVARGTLLVL
VSPVDGSEPIANPFAQPEED
NT seq 423 nt   +upstreamnt  +downstreamnt
atggctgacagaggctcgcatcgtggagggggcggcggcggtggccgtggaggaggtcat
cgagggaggggaggcggcggcggcgtcggtcgcggcggacacggtggaggccagggtggt
gctggcggcgaccgcgagaggcccaagaaggagaacatcctcgacttgggcaagtatatg
gacaagaagattaccgtcaagttcaatggcggtcgcgaagtgactggcacgctcaaggga
tacgacgctctgatgaatcttgtgctcgatgacgtcgaagaagtcatgagagatgacgag
ggaaaggagaacacccgatctctcggcctcgtcgtggcacgcggtacactcttggtcctc
gtcagccctgttgacggaagcgagccgatcgccaaccctttcgcccagccagaagaagat
tga

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