Vibrio diabolicus: AL552_00200
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Entry
AL552_00200 CDS
T05332
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL552_00200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdb03019
]
AL552_00200
03009 Ribosome biogenesis [BR:
vdb03009
]
AL552_00200
Enzymes [BR:
vdb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL552_00200
Messenger RNA biogenesis [BR:
vdb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL552_00200
Ribosome biogenesis [BR:
vdb03009
]
Prokaryotic type
rRNA helicases
AL552_00200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
AVF92304
LinkDB
All DBs
Position
2:complement(42699..44630)
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AA seq
643 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKIDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLDIDPAT
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAAGKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGYRGNREGGNRGGDRREGGRREGGFRGN
RDGNRDGNREGGERRFDRNRGGDHRGNHRGERGHGRGRRTQEA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacacctg
ttggaaggtgctgacgcgctgggtaaagctcaaacaggtacaggtaaaacggcagcgttc
tctctgcctcttctaaataagatcgatctcaaccaacgtaaaccacaagctatcgttctt
gcgccaacgcgtgagttagcgatccaggttgcggctgaaatgaaaaaccttggtaagaac
atcaagggtcttaaagttttagagatttacggtggtgcttctatcgtagatcagatgcgt
gctcttaagagcggtgcacaagttatcgttggtactccaggtcgtgttcaagaccttatc
aaccgtgaacgtctacacctagatgaagtaaacacgtttgtactagacgaagctgacgaa
atgctaaacatgggtttcgttgatgacgttactgcgatcatggaacacgcaccagagtct
gctcaacgcgttctattctctgcaacaatgcctccgatgcttaagaaaatcgttgagcgt
ttcctacgtgagcctgtaatggttgacgttgctggtaagaaccacactgtagacaaagtt
caacaacagttctgggtagtgaagggtgtagagaaagatgaagcgatgtctcgtcttctt
gaaacggaagaaactgatgcgtcaatcgtcttcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggctttaaagcggcagctctgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgttgcacgtggtcttgatgttccacgtattacgcacgtattcaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgctgga
cgtaaaggtaaagcgatccttcttgttcgcactaaccaaatccgtatgcttcgcactatc
gagcgcgtaactaagtcatctatggaagagattcaacttcctctacgtgaccaagttgct
gaagctcgtctagctaagctaggcgctgagcttgaagcagagaaagagcacaaagctcta
gacaaatttgctgagctagtagagaaactacaaacttctctagacatcgacccagcaacg
cttgctgctatgcttcttaagcgtcagcaaggtaaacgtcctctgttctacattggcgaa
gacccaatggttgaagcgattgagcgtgataagcaacgccgtaaagagcgccgtgaaggt
ggtcgtgacggcggtcgtaacttcaacaaccaagattgggatacttaccagcttcaagtt
ggtcgcgagcaaggtgttcaagttaaagacatcgttggtgctctagcgaacgaactaggt
ctaggtaaaggctctatcggtgcgatcaaactagcacaaggccacacattcgttcagcta
ccaaaagcaatgacttctgaagctgcgggcaagctaagcaaactacgcatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgatgacttccgagagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgatggcggttaccgtggcaaccgcgaaggc
ggcaaccgtggtggtgatcgtcgtgaaggcggtcgtcgcgaaggtggcttccgtggtaac
cgtgacggcaaccgcgatggtaaccgtgagggtggcgaacgtcgcttcgatcgtaaccgt
ggtggtgatcaccgtggtaaccaccgtggtgagcgtggtcacggccgtggtcgtcgcact
caagaagcataa
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