Vibrio diabolicus: AL552_03560
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Entry
AL552_03560 CDS
T05332
Name
(GenBank) siderophore biosynthesis PLP-dependent protein
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb00300
Lysine biosynthesis
vdb00470
D-Amino acid metabolism
vdb01100
Metabolic pathways
vdb01110
Biosynthesis of secondary metabolites
vdb01120
Microbial metabolism in diverse environments
vdb01230
Biosynthesis of amino acids
Module
vdb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
AL552_03560
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
AL552_03560
Enzymes [BR:
vdb01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
AL552_03560
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AVF92916
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All DBs
Position
2:complement(730468..731670)
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AA seq
400 aa
AA seq
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MSNSLSLPTRISQQVHTLAQQQNQPLCAYLYDLKALEEHIKQLRHVLPKNVELFYAAKAN
PSGPILKTLAPHVDGFEAASGGELTHLHQQQLDKPLIFGGPGKMPSELQQAIELDVDAIH
VESLTELQRIGALTERLNRPASIFLRMNIDIGDITLSKLAMGGKPTPFGLDESELSNALM
LLRDFPQVLLKGFHFHLMSHQLDVERHLALMQRYFQVVKAWQQEFELGELMINLGGGMGI
NYQNPEQHFPWMEFCDKLEFLIAKEQVQDWTLRFECGRFITAACGYYVMEVLDIKQNLGE
NFVIARGGTHHFRTPAAQSHDHPFVILKSEQHHEISHPIQHAQATFVGQLCTPKDVLARN
QHVAHADIGDYVVFTLAGAYAWNISHQNFLMHEPPIFHYF
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattcactctccctaccgacacgtattagccagcaagttcacacgctcgcacag
cagcaaaatcaacccttgtgcgcgtacttgtatgacctaaaagccttagaagaacacatc
aaacaactgcgtcacgttttgccgaaaaatgtcgagctattttacgcagccaaagccaat
ccatcgggcccgattctcaaaacgctcgcgccgcatgtcgatggttttgaagcggcatct
ggcggggagttgacacacctccaccagcaacaactcgataagccgttgatcttcggcggc
ccagggaaaatgccaagtgaattgcaacaagcgattgagctggatgttgatgcaattcat
gtcgaaagcctcaccgagctacaacgcattggagcactaaccgagcgcctcaaccgccca
gcttcgatctttttgcgtatgaacatcgatattggcgacatcacgctcagtaagttggcg
atgggcggcaagccgactccgtttggcttggacgagtccgaactgagcaatgctttgatg
ttgctgcgcgatttcccgcaagtgttactgaaaggcttccattttcacttgatgtcgcat
cagctcgatgttgaacgtcacttagcgttaatgcagcgctatttccaagtcgtgaaggcg
tggcaacaagagtttgaactcggtgagctgatgatcaacttgggtggaggcatggggatt
aactaccaaaaccctgagcaacactttccgtggatggagttttgcgacaagttggaattc
ctgatcgccaaagagcaagtgcaagattggacactgcgttttgaatgcggacggttcatc
acggcggcatgtggttattacgtgatggaagtgctggatattaagcaaaatcttggcgaa
aactttgtcatcgcgcgaggaggaacccaccatttccgcacgccagcagcacagagccat
gatcatccatttgtcatcctgaaaagcgagcaacaccatgagatttctcatccaattcag
catgcacaagcgacctttgtcggccagctttgtacgcccaaagatgtgctggcacgcaat
caacacgtcgcccacgccgatattggtgattatgttgtgtttaccttagcaggcgcctat
gcgtggaacatctcccatcaaaacttcttgatgcatgaaccgccgatcttccactatttc
taa
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