Vibrio diabolicus: AL552_06915
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Entry
AL552_06915 CDS
T05332
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL552_06915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdb03019
]
AL552_06915
Enzymes [BR:
vdb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL552_06915
Messenger RNA biogenesis [BR:
vdb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL552_06915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
P-loop_SecA
Helicase_C_2
Helicase_RecD
ERCC3_RAD25_C
AAA_22
Birna_VP4
Imm8
Motif
Other DBs
NCBI-ProteinID:
AVF93497
LinkDB
All DBs
Position
2:1501601..1502872
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AA seq
423 aa
AA seq
DB search
MRLHMSVNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAA
FGLPIIQTVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTELSIVCVYGGTSIGVQ
KRKLEEGVDILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLP
AEKQILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAY
LIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRA
LIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLH
AIENLLDQRLPQEWLAGFEPSLIEEVEPEKNGSGRRRSRSSEKRKLKAKLAIHKNRGKSR
NSR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaggttacacatgtctgttaattttgctgacttaggcattgaacaaaagctaatcgag
acgctaagcaatctaaatatcgtgacaccaacaccagtgcaagaaaagtctattccacat
gtccttgaaggaaagaacttacttgctgctgcacaaactggtacggggaaaacagctgcg
tttggtttacctattatacaaaccgttcagcaaaagaaactcaacggtacgcctcaagca
ttggttttggttccaacacgcgagcttgcgcagcaggtatttgataatttgaatcagtac
tctgcacaaaccgaacttagcattgtgtgtgtttatggtggtacaagcattggcgtacaa
aagaggaagttagaagagggcgttgatattttgattgcaacaccaggccgccttttggat
catctgtttaatggcaacgtaaacatctccaaaaccagtatgctcgttctagacgaagcc
gaccgtatgttagatatgggattctggcctgacttgcaacgcatcttccgacgtttaccc
gccgaaaaacagatcctgttgttctctgcgacatttgaaaagcgaatcaagactattgcg
tacaaactcatggaatcgccggttgaagttgaagtgtcaccagcaaacacgacggcagaa
acggtaaaacagatggtttatccggtagacaaaaagcgtaaacgtgaattattggcgtac
ttgattggctcgcgcaattggcagcaagtgcttgtatttacaaaaactaagcaaggtagc
gatgagctagcaaaagagcttaagttagatggcataaaagcggtttcaattaacggggat
aagtcacagggtgcgcgtcaaagagcgttggatgagttcaaacaaggtaaggtgcgtgcg
ttgattgcgacagatgtagcagcacgaggactggatattcaagagttagagcaagtggtg
aactttgatatgccatttaaagccgaagattatgtccaccgtataggccgtactggccgt
gcaggaaagtcggggttagctgtgtctctaatgagtcgggatgaagaatatttattgcac
gctatcgagaatttgcttgatcaacgcctaccgcaagaatggttggcaggcttcgagcca
agccttatagaagaagtcgagcctgagaaaaatggtagtggacgccgtcgaagccgttca
tcagagaagcgtaagctaaaagcaaaattagcgattcataagaaccgtggtaaatcacgt
aactctcgctaa
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