Vibrio diabolicus: AL552_12740
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Entry
AL552_12740 CDS
T05332
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vdb
Vibrio diabolicus
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vdb03016
]
AL552_12740 (rnd)
Enzymes [BR:
vdb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AL552_12740 (rnd)
Transfer RNA biogenesis [BR:
vdb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AL552_12740 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF7018
Motif
Other DBs
NCBI-ProteinID:
AVF94594
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All DBs
Position
1:778909..780075
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AA seq
388 aa
AA seq
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MIECQRFAGIFYSEKYVNYQIITKNKDLEEVCIHAREADVVMLDTEFVRIRTFYPQLGLI
QLFDGNRLSLIDPTELTDMTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQ
LMAAFLGHGLSTGFASLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYE
KLFDKVTQAGWWEAVQQESDLLVSKRIRVTNEENAYLDIKGAWQLKPSELAILKPLATWR
YREAIKRDLALNFIFKEGDLLTVARLGLTNFKKMEAEDIDIRAINRHGAKIAAIVKQAKQ
TPSEEYPAKIERLMDYPGYKQVFKNMKDIVKSASQKSGLATEFLASKKQINQLISWVWKK
DRDPEVLPDLMQGWRLDLLGDKMNKALK
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatgccagcgttttgctggcattttttatagcgagaagtatgtgaattatcaa
attattaccaaaaacaaagacctagaagaagtttgcattcacgcccgagaggcagatgta
gtgatgctggataccgaattcgtccgtattcgcactttctacccgcagttaggtctgatt
cagcttttcgatggtaatcgcctctcgctgattgatccgaccgaattaacggatatgacg
ccgttcgtagcgctattaaaagatacttccgtgttaaaagtgctgcatgcctgcggtgaa
gatttagaagttttccaaaatgcatttggttgtacgccgttccctatggtagatactcag
ttgatggcggcctttcttggtcacggtctatcaacaggcttcgcatcgctggtggaagaa
tatttaggcgtagagctcgacaaaagtgaatcacgtactgactggatggctcgaccgttg
acgcaaaagcaattagattatgctgctgcagacgtgcattacttattaccgttatacgaa
aagctgttcgataaggtgacgcaagcaggttggtgggaagccgtacaacaagaaagtgat
ttgttggtttcaaaacgcattcgcgtcactaatgaggagaatgcctaccttgatattaaa
ggcgcttggcagttaaaaccttctgaactggcgattttaaagccattggcgacgtggcgt
taccgtgaagcaatcaaacgagatttagcgctgaactttatcttcaaagaaggtgacctg
ttaacagtcgctcgtcttggcttaactaactttaagaagatggaagcggaagatattgat
atccgagcgattaaccgccatggcgcgaagattgccgctattgttaaacaagcgaagcaa
acaccttctgaagagtatccagcgaaaattgaacgcttaatggattatccaggttacaaa
caagtcttcaaaaatatgaaagacatagtgaaatcggcgtcgcagaagtctggcttagcg
acggagttccttgcttctaaaaagcagattaatcagctgatcagttgggtgtggaaaaaa
gatcgcgatccagaagtgttgcctgacttgatgcagggatggcgtttggatctgctcggc
gacaagatgaacaaagcattaaagtaa
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