Vibrio diabolicus: AL552_13500
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Entry
AL552_13500 CDS
T05332
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vdb
Vibrio diabolicus
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vdb03032
]
AL552_13500 (topA)
03400 DNA repair and recombination proteins [BR:
vdb03400
]
AL552_13500 (topA)
Enzymes [BR:
vdb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AL552_13500 (topA)
DNA replication proteins [BR:
vdb03032
]
Prokaryotic type
DNA Topoisomerases
AL552_13500 (topA)
DNA repair and recombination proteins [BR:
vdb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AL552_13500 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AVF94729
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Position
1:941246..943876
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVNELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKAD
FKLLVAQKDGSAFKPVNEAETKAAMSVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSNVGVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPP
ARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGEVNWKAVLDNFFADFTGDLEKAELDESEGGMKLNHIVM
TDIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYLVEYGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVAELARFEERLPEKFKYLATAPQEDPDGRPAVVRFSRKT
KENYVRSEENGKPSGWTALFVEGKWEVTDKRKKTKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacgataaataagtac
cttggtaaagactttattgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgcagccatctcaacaaaagggatgagtccggaa
gagaaagcgcgcgttaaaaaagagaaagaccgcaaagcgttgatcaaaaaaatggggatt
aacccatatcatgactgggaagcgaattaccaaatccttccaggcaaagaaaaagttgtc
aacgaactacaaaaactcgccaaagacgcagattgcgtttatctcgcaaccgatttggac
cgcgaaggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgtgtagtttttaacgaaattacgaaaaacgcgatccaacaagctttccaaaca
cctggagagctgaacatggatggtgttaatgcccaacaagcgcgtcgcttcatggaccgt
gtcgttggttttatggtttcacctttactttggaagaaagtggctcgtggtttatctgct
ggtcgcgtgcagtctgttgcggtgaaactattagttgagcgtgagcgtgagattaacgcg
tttgtaccagaagaattctgggatattcatgcgaatacgaaaacgaaagacaaagcggac
tttaaactacttgttgctcagaaagatggttctgcgtttaagccagttaatgaggcagaa
accaaagcagcgatgtctgtgcttgagaatgcaagttacgaagtatgtaagcgtgaagat
cgcccgacgaagagcaagccttcagcaccttacatcacctctacgcttcaacaggcagcg
agtacacgtctgggctacggtgtgaaaaagaccatgatgctagctcagcgcctctatgag
gccggttacatcacttatatgcgtacggactcgacgaacctaagtgccgaggctgtggac
gctgtacgtgactttattggttctgaatttggtgataagtacttaccagcgaaaccgctg
acgtatggcagtaaagaaggggcacaggaagcgcacgaagcgatccgtccttcaaatgtg
ggtgttaaagcggaagacctgcaaggtgtcgatgctgatgcgcacaaactttacgctttg
atttggaatcagtttgtcgcgtgtcaaatgacgccagcagaatacgattcaacaaccatc
agcgtaaaagcagcagaatacacgcttaaagcgaaaggccgtatccttaaatttgacggt
tggactcgtgtacaacgtccaatgggcaaaaacgaggatacaatccttcctgcggtacaa
cttggcgataagctaagcttagagtcacttgaccctaaacagcactttacaaagccacct
gcgcgctacactgaagcagcactggttaaagagctggaaaaacgaggtattggtcgtcct
tcgacttatgcatcgatcatttctacgattcaagatcgtggttacgtaaaagttgatcag
cgtcgtttctacgccgaaaaaatgggcgaaattgttaccgaccgccttgatgacagcttt
aacgatttaatgaactacgacttcaccgcccgcatggaacagaaactggaccaaatcgcg
gaaggtgaagtgaactggaaagcagtgctagataacttctttgctgatttcactggcgat
cttgaaaaagcggaattggatgagtcagaaggcggtatgaagctaaaccatatcgtcatg
acggatatcgaatgtccgacgtgtgggcgcccaatgggtatccgcaccgcttcgacaggt
gtgttcttaggctgttcaggttacgcgttaccacctaaagagcgttgtaagacaaccatc
aacttgggtgatgaagaaggcattattaacgttttagaagaagacgttgaaacggccgcg
cttcgtgctaaaaagcgttgtccgatctgtgaaacggcgatggatgcatacctgattgat
gacaagcgtaagatgcatgtttgtggtaataacccgaactgtgaaggctaccttgttgaa
tacggtgagttcaaagtcaaaggctatgatggtccagttgttgaatgtgacaaatgtggc
tctgatatggtgcttaagaacggtcgctttggtaaatacatggactgtacgagtgaaacg
tgtaagaacactcgtaagattctgaagaatggcgaagtcgcgccaccgaaagaagatcct
gttcatttccccgagttgccttgtgaaaactcagatgcgtatttcgtacttcgtgatggt
gcttcaggtctatttatggcggcaagcaacttcccgaaatcgcgcgagacacgtgctcct
ttggttgcggaactggcacgttttgaagagcgtttacctgagaagttcaaatacctagcg
accgcaccgcaagaagatcctgatggtcgtcctgcagtcgtacgctttagtcgcaaaaca
aaagagaactacgttcgttcggaagagaacggcaaaccatctggttggacagcgctcttt
gttgaaggtaagtgggaagtcacagataagcgtaaaaaaacgaaagcataa
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