Vibrio diabolicus: AL552_18935
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Entry
AL552_18935 CDS
T05332
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL552_18935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdb03019
]
AL552_18935
03009 Ribosome biogenesis [BR:
vdb03009
]
AL552_18935
Enzymes [BR:
vdb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AL552_18935
Messenger RNA biogenesis [BR:
vdb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL552_18935
Ribosome biogenesis [BR:
vdb03009
]
Prokaryotic type
rRNA processing factors
AL552_18935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AVF95657
LinkDB
All DBs
Position
1:1978365..1981442
Genome browser
AA seq
1025 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KEHIQLVRPDFLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEFDLISYLLPKKLEAMKEAEGKEPAEVDVKPKRIEEPVLKGFAAPSQTA
PAPAAKPAPEAKKKEVEQEEKPGLFSRLFKALGSFLFGGSEEVKEEPKPQEEKKPNRDNR
RNKRDRNDRRRNNNQRDNRENRDNRDNRDNRRRRKPRDEQANEQNEAQQQTNKQQNRNQK
RKPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVKERRQRRK
LNKSVRVKDQEAIEKKAEETAVKTQETVETKVEKPTEAAVEAQQDNKQAESKQRRNRRSP
RHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPHYIPKPAPKKEEQVKEETVA
AVPTMQGGFACPEMAMGKVIIRREQPVVTEAPVVESKIQETVEAKVEAPVVEAPVVEAVI
AEKTESAVVETASVEPIVETPVTEHAEPVDAIVETAPAEELVVEAAKEVAAEAPVAKPEP
KVEAIKVAAKLNASAPMTKAPGPQELREITVAAAPFKTERYQAKGAGSQVAKNRASAEMT
KPNFN
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgat
ggccagcgacttttcgatcttgatatcgagagtccaggtcatgaatctaaaaaagcgaat
atctacaaaggacgtatcacacgtatcgaaccaagcttagaagccgcatttgttgattac
ggcgccgagcgtcacggtttcctccctctcaaagaaattgcccgcgaatatttccctgaa
ggttacacctaccaaggtcgtccaagcatcaaagaagtgctaacggaaggccaagaagtt
atcgttcaagtggaaaaagaagaacgtggaagcaagggcgcagctcttactactttcatt
tctcttgctggtagttaccttgttctgatgcctaacaaccctcgtgctggcggtatttct
cgtcgaatcgaaggtgacgagcgtactcaactaaaagccgcattaagtactttggaactg
cctcagggcatgggcctaatcgtacgtactgctggcgttggcaagagtgctgaagaactt
gagtgggatttgaatgtactacttaaccactggggtgcaatcaaaggtgcagcggactct
aaccctgctccattcttaatccaccaagaaagtaacgttatcgttcgtgcaatccgtgac
tatttgcgtcgtgatattggcgaaatcttaattgacagcaacaccatctacgaacgtgca
aaagagcacattcaattggtgcgccctgatttccttaaccgcgttaagaaatatgaaggc
gaagttccactattcagccactaccaaatcgaaagccaaattgaatcagctttccaacgt
gaagtgcgtctgccatctggtggttctattgttattgacccaaccgaagcactaacgtct
atcgatatcaactctgctcgtgcaaccaagggcggcgatattgaagaaacagccctaaac
acgaacctagaagcagccgacgaaattgctcgccagttacgtctacgtgacttgggtggc
ttagtggttatcgactttatcgatatgacacctgttcgccaccaacgagaagtagaaaac
cgtctacgtgaagccgttcgtcttgaccgcgctcgtgtacaaatcggtcgtatttctcgc
tttggtttgttggagatgtcacgtcaacgtttaagcccttctctagcagaagcaagccac
cacatctgtcctcgctgtagcggtactggagtcgttcgcgacaacgaatctctagcactt
tctgtgcttcgtttaatcgaagaggaagcactgaaagacaatacagcgcaagttctcgca
gttgtacctgtgccaatcgcttcttacttgttgaacgaaaaacgtcgttcagttaaccat
atcgaacgcattcaagaagtgaagattacggttgttccaaactctgacatggaaacgccg
cacttcgaagttatccgtgttcgtgaaggtgaagagttcgatctgatttcttatctactt
cctaaaaaactggaagcaatgaaagaagcggaaggtaaagagccagcggaagttgacgta
aaacctaaacgaatcgaagaacctgttcttaaaggctttgcggctccttctcaaacggca
cctgcaccagcagctaaacctgcccctgaggcgaagaagaaagaagttgaacaagaagaa
aaacctggactgttcagccgtttgtttaaagcacttggtagtttcctattcggcggttct
gaagaagtaaaagaagaaccgaaacctcaggaagagaaaaagccaaatcgcgataatcga
cgtaacaaacgtgatcgcaatgatcgtcgtcgaaataacaaccaacgcgataatcgtgag
aaccgcgacaatcgtgataaccgtgataaccgacgtcgtcgtaagcctcgtgatgagcaa
gcgaatgagcaaaacgaagctcaacaacaaaccaataaacagcaaaaccgcaaccaaaag
cgtaagcctaaagctcaacaagcagacaaagcccaagagcaaaaagcaaatgcaaaagta
gcggaaaaaggcctgcagctagcggcggaagctcgaactgaaacaaaaccagaagagagc
aaaccaaagcaacaaaacgcgaaagcagaaaaagtgaaggagcgtcgccaacgtcgcaaa
ctgaacaagtctgtacgcgttaaagaccaagaagcgattgagaagaaagcagaagaaacg
gcggttaagactcaagaaacggttgaaaccaaagttgagaagccaacagaagcagcggta
gaagcacaacaagacaacaagcaagcagagtctaagcaacgtcgtaaccgtcgttcgcca
cgtcacctgcgtgcaagtggccagcgccgtcgccgtggtcgcgatcgccgtcctaacccg
ttccgcctgcgtaaaggtggtgtagcttctcctgagatggctatgggtaaagtaatgcca
cactacattccgaaaccagcacctaagaaagaagagcaagttaaggaagaaacagtagca
gcagtacctacaatgcaaggtggttttgcttgtccagagatggctatgggtaaagtgatt
attcgccgcgagcaacctgttgtaacagaagcgccagttgttgaatcaaagattcaagaa
acagttgaagcgaaagtggaagctccagtagtagaagcacctgttgtggaagcagtaatc
gcagaaaaaactgaatcggcagtagtagaaacagcttcggtagagcctatcgttgaaact
cctgtaactgaacatgctgaaccggttgatgccattgtagaaacggcaccagctgaagag
cttgtcgttgaagcggcaaaagaggttgcagccgaagcgccagtagctaaaccagagcct
aaagtcgaagccattaaagttgcggctaagctaaacgctagcgcaccgatgacgaaagca
cctggccctcaagagctacgcgaaatcactgttgcagcagcaccgttcaaaaccgaacgt
taccaagctaaaggtgcgggtagccaagtggctaaaaaccgcgcatcggcagagatgaca
aagcctaactttaactag
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