Vibrio diabolicus: AL552_22210
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Entry
AL552_22210 CDS
T05332
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vdb
Vibrio diabolicus
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vdb03021
]
AL552_22210
Transcription machinery [BR:
vdb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AL552_22210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
COG2_N
WWE
Motif
Other DBs
NCBI-ProteinID:
AVF96220
LinkDB
All DBs
Position
1:complement(2643168..2646077)
Genome browser
AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVAMDARTVTLMFAASEENRVYARNDAPVTRVTFNVGDV
IDCQEGWSLKVEEVLEDEGLYTYFGTREDTQETAVVLREIFLSNQIRFNKPQDKLYAGQI
DRMDNFVLRYRALTNQFEQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCIEAFA
DAENPFDTQQYVLCSLDFLRKSRKRFEQALEGEWDLLVVDEAHHLEWSQDKPSREYQVVE
GLAERTPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEEEQYAPVADAITSLF
SGEKLPDEAKNQITELLSEQDVEPLFRIIESEADEEAKASARRELIDNLMDRHGTGRVLF
RNTRAAIKGFPARNVHLMPMDIPPQYTTSMRVAGMIGGKMSSEARAMKNLYPEEIFQEFE
GDDASWWQFDSRVNWLLEKVKEKRSKKILVIASRASTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQNRDIDIHVPYLKGTSQAILARWFDEGLNAFAETCPTGRAVYDKYSDDLIEILASGD
TSTLDEIIEASAKMNKELKSQLEQGRDRLLEMHSNGGEKAQQIVEKIESTDGDTNLVTFA
LSLFDTIGLNQDDKGENALIVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMIQGGIDLLMSEGVGTSAVSLLKNKALPVGTILLELIYAVDAQAPKRSGIARFLPKT
PIRLMMDSRGNDLSAQVEFESFNRQLSPVNRHLGSKLVTSVQKDVHRLIEAGDSLIEAKV
EEVRKQAHQDMQHSLNAELERLQALKAVNPNIRDEEIEAIDAQIKELTGYINQAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttggggcagcgctggattagcgatacggaaagcgatttaggtttaggt
accgttgtagcaatggatgctcgtactgtgacattgatgtttgcagcgtcagaggaaaac
cgagtttacgcacgtaacgatgcacctgttacccgagtcacctttaacgttggtgatgtc
atcgactgccaagaaggttggtctctaaaagttgaagaagtactggaagatgaaggtcta
tacacctatttcggtactcgtgaagacacgcaagaaaccgccgttgttctgcgtgagatt
ttccttagtaaccaaattcgttttaataaacctcaagataagttgtacgccggtcaaatc
gatcgcatggacaactttgttctgcgttaccgtgcgctaaccaaccagtttgagcagcat
aagagcccaatgcgtggcctatgtggtatgcgtgcaggtttgatccctcatcagctttac
atcgcgcacgaagttggccgtcgccacgcgccacgcgtattactggcggatgaagttggt
ttgggtaaaaccatcgaagcgggcatgatcatccaccagcaagtgctgtctggccgtgca
gaacgtattttgattgtggtacctgaaacactgcaacatcaatggctggttgagatgatg
cgtcgtttcaacctgcatttctctatctttgacgaagagcgctgtatcgaagcattcgcg
gatgcagaaaacccatttgatacccagcaatacgtgctgtgttctttggatttcctacgc
aagagccgcaagcgttttgaacaagcactcgaaggcgaatgggacctattagttgtcgat
gaagcgcatcaccttgagtggagccaagataaaccaagccgtgaataccaagtggtagaa
ggtttagctgaacgcactccgggcgtactgctactgacggcaacgccagaacagcttggt
cgtgagagccactttgctcgtctgcgtttgctggatcctgaccgtttctacgattatgaa
gcgtttgtcgaggaagaagagcaatacgcacctgtagcggatgcgattacttcacttttc
tctggtgaaaaactgcctgatgaagcgaaaaaccagattactgagttgttgtctgaacaa
gacgtagaaccacttttccgcattatcgaaagtgaagcggacgaagaagcgaaagcgtca
gcgcgccgagagttgatcgacaacttgatggatcgtcacggtacgggacgagttctgttc
cgtaacacacgtgcggctatcaaagggttccctgcgcgtaacgtgcacctgatgccaatg
gatattccaccgcaatacaccacgtcaatgcgtgttgctgggatgatcggcggtaagatg
agttcggaagcacgtgcaatgaagaacctttacccagaagagatcttccaagaatttgaa
ggcgatgatgcaagctggtggcagtttgactcgcgcgtgaattggttacttgaaaaggta
aaagagaagcgcagcaagaaaattctggtgattgcctctcgtgcaagtacggctctgcaa
ttggagcaagcgctgcgtgagcgtgaaggcattcgtgcgaccgtcttccatgaaggtatg
tcgatccttgagcgtgacaaagcagccgcttactttgcgcaagaagaaggtggtgcacag
gttcttatctgtagtgaaatcggctctgaaggccgtaacttccagtttgccaaccaatta
gtcatgtttgacttgccgttcaaccctgacttgcttgagcaacgtatcggtcgtttggac
cgtatcggccagaaccgcgacatcgacattcatgttccttacctgaaaggtacctcgcaa
gccattcttgctcgctggtttgatgaaggtttaaacgcttttgcagaaacttgcccaaca
ggccgtgccgtttacgataagtactctgatgatctgattgaaatccttgcttctggtgac
accagcacgctagatgagatcattgaagcgtcagcaaaaatgaataaagagctgaaatcc
caattggagcaaggccgtgatcgcctattagaaatgcattcaaatggcggggaaaaagca
caacaaatcgttgagaaaattgaatcaaccgacggtgataccaatttggtcaccttcgca
ctttctcttttcgatacgattggtttgaaccaagacgataaaggtgaaaacgcactgatt
gtgaccccatctgagcacatgatggtaccaagctacccaggtctgccatacgaaggagcg
acgatcacgtttgatcgtgatacggctttgtctcgtgaagatatgcactttatcagttgg
gagcacccaatgatccagggtggtatcgatcttctgatgagtgaaggggtggggacttct
gcggtatctctactgaaaaacaaagcgttaccagtaggtacgattcttcttgagctgatt
tacgcggtagatgcgcaagcgccaaaacgcagtggtatcgcgcgcttcttaccgaaaacg
ccaatccgtttgatgatggactcgcgtggtaatgatttgtctgctcaagtggaatttgaa
agctttaaccgccagctcagccctgtaaaccgtcacttaggtagcaagttggtcacgtcg
gtacagaaagacgtacaccgcttaattgaagcgggggatagtcttatcgaagcgaaggtt
gaggaagtacgcaagcaagctcatcaagatatgcagcatagcttgaatgcagaacttgag
cgtttgcaagcactgaaagcggtaaacccaaatattcgtgatgaagaaattgaagccatt
gatgcacaaattaaggagctcactggttacatcaaccaagctcaagtgcagctcgattcg
ctacgtttgattgtggtgagccacaactaa
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