Vibrio diabolicus: AL552_22340
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Entry
AL552_22340 CDS
T05332
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vdb
Vibrio diabolicus
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vdb03019
]
AL552_22340
Messenger RNA biogenesis [BR:
vdb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AL552_22340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AVF96244
UniProt:
A0AAX1XGJ1
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All DBs
Position
1:complement(2676150..2678159)
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AA seq
669 aa
AA seq
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MRYTPTLKLSTRLVAFVTMIVICAMFILFVGGTLSFKRLGQEYLTHYLEGIVEVVDKEME
DPDAAYSMQRWMPKMLQASNIVEMTLSTNNAVVYRFKDTSHQMEASVLFETEYQLTHNQD
YTIHFKAIPPYLGYSYSMQALWSITLAVILIIFCLMRGVAWLKEQLEGSEMLEERGRMIL
AGRVEQYAKGDKKEWPYTASEALDVLIEELQDARQERSRFDTFIRTQTFLDKLTGTANRV
LFDSKLESALLESGARGAVLLVRIQDWKLVEEEQDKQITDEFIVEVGSLLSNLVQRYPDV
VFSRYYDADFALFLPHQSAKDVANLASQCIRQLEKLIPPEPLDPDNWCHIGITTYKEGER
HSQIIDEAETALRSAQLQNNNNWSRFKKWNHDEEARGSVRWRTLFDTALTPENVILYAQS
VHPISDATHKKSLYEELTCRIRDPENGIVKASRFISAIRQVGYEAQMDKSVINKFLREFK
DNFDNSRSYALNLNVTPFSNREYFKWFRDELLQLSREQRKCLSFEFVEAQFVRHLDFMRP
VAKMLAGLGCHLMVGQAGRTIVSTHYLKEVDIRYLKLHRSLVAKIDQRHENQLFVRSMLG
AAANSKTKIIAVGIENQNELNTLIELGVYGGQGRYFSAEQQFLPRPQALPSSQSESQVKL
GRRNRWRKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaggtataccccaactcttaagttaagcacacggctggtggcttttgtcaccatgatc
gtcatctgcgccatgtttatcttgtttgtcggtggcaccctctcttttaaacgtcttggg
caggaatatctcacccattatttagaagggatcgtagaggtggtcgacaaggagatggaa
gatcctgacgctgcttattctatgcagcgctggatgccgaaaatgctgcaggcttccaat
attgtcgaaatgacattgtcgaccaacaatgcggttgtttatcgcttcaaagatacttct
catcaaatggaagcgtcagtcttgtttgagacagaataccaactgactcacaatcaagat
tacacgattcattttaaagcgatcccgccttacttaggttacagctactcaatgcaggcg
ctttggtcgatcacgcttgccgttatcctgatcatcttctgtttaatgcgcggtgttgcg
tggcttaaggagcaattagaaggctctgaaatgctcgaagagcgaggcaggatgatcctt
gctggtcgggtagagcagtatgcaaaaggtgacaaaaaagaatggccttatactgccagt
gaagcgctcgatgtattaattgaagagttacaagatgcgcgtcaagagcgaagccgattt
gatacctttattcgaactcaaaccttccttgataagttaacaggtaccgccaatcgagtg
ctatttgatagcaaactggaatcggcgttactagaaagtggggctcgcggcgccgttttg
ctagtacgtattcaagactggaaactggttgaagaagagcaagataagcaaattacggat
gagtttattgttgaagttgggagtttattatccaacttagttcagcgataccctgatgtt
gtattttctcgttattacgatgctgattttgcgttatttctgccgcatcaaagtgccaaa
gatgtggctaatttggcatcacaatgcattcgccagttagaaaaattaattccgccagag
ccactcgacccagacaactggtgtcatatcggcatcactacttataaagagggtgagcga
cacagccaaatcatcgatgaagcagagacagctttgcgtagtgcgcaactacaaaataac
aataattggagtcgcttcaaaaaatggaaccacgatgaagaagctcgcggaagtgtgagg
tggagaacgttatttgacacagcacttacaccagaaaatgtgatactctacgcacaatct
gtgcacccaataagtgacgcaacgcataaaaaatcattatatgaagagttaacatgtcgg
attcgcgatcctgagaatggcattgttaaagcgtctcggtttatttctgcgatcagacag
gttggttatgaagcgcaaatggataagtcagttattaataaattcttaagagaatttaag
gataattttgataactcaagatcgtatgcgctcaatttgaatgtaacgcctttttctaac
cgagagtactttaaatggtttcgtgatgaactcttacagttgtcacgtgaacagagaaag
tgtctcagttttgagtttgttgaagcacaatttgtaagacacttagactttatgcgacca
gtcgctaaaatgctggccggtttagggtgccacttaatggttgggcaggctggacgaacc
atcgtcagcactcactatttaaaagaagtggatattcgttaccttaaacttcatcgcagt
ttagtagcaaaaatcgaccagcgacatgagaaccagctatttgtccgcagcatgctaggt
gccgcggcaaacagtaaaactaaaatcatagcagtgggaattgagaatcaaaacgagctc
aacactttaattgagctcggggtttatggtgggcaagggcgctacttctctgcagagcag
cagtttcttcctcgtccacaagcattgccaagttctcaatcagaatcccaagtgaaattg
ggaagacgaaatcgctggcgtaaaaaataa
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