Vibrio diabolicus: AL552_22360
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Entry
AL552_22360 CDS
T05332
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
vdb
Vibrio diabolicus
Pathway
vdb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL552_22360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vdb03400
]
AL552_22360
DNA repair and recombination proteins [BR:
vdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL552_22360
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL552_22360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_23
BCA_ABC_TP_C
nSTAND3
DnaJ_CXXCXGXG
NACHT
Viral_helicase1
AAA_25
AAA_21
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AVF96248
LinkDB
All DBs
Position
1:2681033..2683855
Genome browser
AA seq
940 aa
AA seq
DB search
MDKIEVRGARTHNLKDINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC
PTHHAPLAAQTISQMVDKVLEMPEGSKMMLLAPIVKERKGEHVKTLENLAAQGFIRARID
GETCDLSDPPTLELHKKHTIEVVVDRFKVRPDLQQRLAESFETTLELSGGIAVVAPMDGD
GEEIIFSANFACPQCGYSMQELEPRLFSFNNPAGACGTCDGLGVQQYFDPSRVIQDDSLS
LAQGAIRGWDQKNYYYFQMLTSLADHYGFDLHAPFNSLPKKTQDVILKGSGRTEIEFKYI
NDRGDIRVKRHPFEGILNTLERRYRDTESNSVREELAKYISTKSCSSCGGTRLRLEARNV
FIADTTLPEIVELSIADALEFFHSLKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLTHLRDLGNTV
LVVEHDEDAIRCADHVIDIGPGAGVHGGHVVAEGTMEEIIANPNSLTGQYLSGAKEIAVP
KDRTPRDPKKTVELLGATGNNLKNVNLSIPVGLFSCITGVSGSGKSTLINDTFFKIAHTQ
LNGATTAQPSPYKSIKGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQES
RSRGYKPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYK
GKTIDEVLEMTVEDARTFFEPVPAIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLA
RELSKRDTGKTLYILDEPTTGLHFHDIQQLLTVLHRLRDHGNTVVVIEHNLDVIKTADWI
IDLGPEGGQGGGEIIAQGTPEDVSQIEGSHTAHFLKPMLK
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatagaagttcgcggtgcccgaacccataacctcaaagacattaatcttaca
atccctcgcgataaactgattgtcattactggactaagtggctccggtaaatcctctctc
gctttcgatacattgtatgcagaaggccaacgacgctacgtagagtctctctctgcctac
gctcgtcagtttttgtctctgatggaaaaacccgatgtcgaccatattgaaggattatca
cccgcgatttctattgaacagaagtctacttctcataacccgcgttcaaccgtcggtaca
attaccgaagtctacgattacttacgtctgttgtatgctcgtgtgggtgaaccccgctgt
ccaacgcaccatgcccctcttgccgcacaaaccatcagtcaaatggtggacaaagttcta
gagatgccagaaggcagcaaaatgatgctgttggcccctattgtcaaagagcgtaaaggt
gagcatgttaaaacgcttgagaacctggcggctcagggctttattcgtgcgcgtattgat
ggagaaacttgcgatctttcagatcctccaacccttgagctacataaaaagcacaccatt
gaagtcgtggtcgaccgctttaaagttcgtcccgatctgcaacagcgcttagcggaatct
ttcgagaccacgctcgagttatcaggcggaattgcggttgtcgcgccaatggatggagac
ggtgaagagattattttctccgccaacttcgcttgtccacaatgtggttacagcatgcaa
gagttagagccgcgacttttctcattcaacaaccctgctggtgcatgtggcacttgtgat
ggtttgggtgtgcagcaatacttcgatccaagccgagtaattcaagatgattcattaagc
ttggcacaaggtgcgattcgcggttgggatcaaaagaactactactacttccaaatgctc
acctcattggctgatcattatggttttgatctccatgcaccttttaattctctgccaaag
aaaacgcaagatgtcattctaaagggctctggccgcactgagattgagtttaaatacatc
aacgatcgtggcgatattcgtgttaaacgccatccattcgaaggtattctgaataccctc
gaacgtcgttatcgtgatacagaatccaactctgtccgtgaagagcttgcgaaatacatc
tccactaaatcttgttcaagctgtggtggtactcgtctgcgccttgaagcacgtaacgtg
tttattgctgatacgacactgcctgagattgttgaacttagcattgctgatgcattggaa
ttcttccattccttgaaactggagggtcaacgagcccaaatcgctgaaaaagtgatgaag
gaaatcaacgatcgcctgcagttcttggttaacgttggtttgaactatctaaacttgtct
cgcagcgccgaaacgctctctggtggtgaagcacaacgtattcgtttagcaagccaaatt
ggggcgggtcttgttggtgtgatgtatgttctggacgaaccgtcgattggtctccaccag
cgtgataatgaacgcttattaaaaacgctcactcatttgcgcgatttggggaataccgtg
ctcgtggtagaacacgatgaagatgctattcgctgtgcggatcatgtcatagatatcggt
cctggcgctggcgtacacggtggtcatgttgtcgcggaaggcaccatggaagagataatc
gcaaatccgaattctctgacaggtcagtacttaagtggcgctaaagaaatcgcagtgccg
aaagatcgcacgccgcgtgatccgaaaaaaacggttgagctcttaggcgcaacaggtaat
aaccttaagaacgttaatctttcaattcctgttgggttattcagctgtattacaggggta
tctggttcaggtaaatcaacgctgattaatgatactttctttaaaattgctcatacccaa
cttaacggggcgacaacggctcagccttcaccttataagtcgattaaaggtttagagcac
ttcgataaagttatcgatatcgatcaaagcccaattggtcgtacacctcgctctaaccct
gcaacctatacggggatctttaccccaatccgtgaactgtttgcaggcacacaagagtcg
cgttctcgcggttacaagcctggacgttttagctttaacgtacgcggtggtcgttgtgag
gcctgtcagggtgatggtgtcattaaagttgaaatgcatttcctaccagatgtttatgtg
ccatgtgatgtatgtaaaggtaagcgctacaaccgtgaaacacttgaagtacgttacaaa
ggcaaaaccattgatgaagtgctagaaatgacggtcgaagacgcccgaacgttctttgaa
cccgtacctgctatagcacgtaagctacagactctaatggatgttggcttgtcttacatt
cgcctaggtcaagcggcaacgacactctccggtggtgaagctcagcgtgtgaaactagcg
agagagctatccaagcgtgatacaggaaaaaccttgtacattttggatgaaccaacaacc
ggcctgcacttccatgatatccagcagttgctcactgtattgcacagacttcgcgaccac
ggaaatactgtcgtggtgatcgagcataacctagatgtcattaagactgcggactggatt
atcgatctagggcctgaagggggacagggtggcggcgagataatcgctcaaggcacacct
gaagatgtgtcgcaaatcgagggttcgcacacagctcacttccttaagcctatgttgaag
tag
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