Vibrio diabolicus: AL552_23450
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Entry
AL552_23450 CDS
T05332
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL552_23450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vdb03021
]
AL552_23450 (rpoC)
03400 DNA repair and recombination proteins [BR:
vdb03400
]
AL552_23450 (rpoC)
Enzymes [BR:
vdb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL552_23450 (rpoC)
Transcription machinery [BR:
vdb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL552_23450 (rpoC)
DNA repair and recombination proteins [BR:
vdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL552_23450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Tipalpha
Motif
Other DBs
NCBI-ProteinID:
AVF96422
LinkDB
All DBs
Position
1:complement(2904090..2908292)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELETTNSETKRKKVTKRLKLVEAFIASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLSGPEEAEKAYRTK
QAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSIKL
HNAKSVLADDGKIVITSRATELTIIDEFGRTKEKHKLPYGTLLSKGDGDTVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDPAARPSAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAAVGVGATLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRESGEAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSEFLPGEQIEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRSEAQDGPS
AEQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atctttggtccagttaaagactacgaatgtctttgtggtaagtacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacaaactaaagttcgtcgtgac
cgtatgggccacattgaactggcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactgatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaacagaaccaggtatgactgatctagaaaaaggtcagatgctt
acggaagaagagtatctagatcgtctagaagagtggggcgacgagttcactgctaagatg
ggtgcggaagctatcaaggacctactaggttctatggatatgcacgctgaagcagaacaa
atgcgtgaagagttagagacaacaaactctgaaactaagcgtaagaaagtaactaagcgt
cttaagctggtagaagcgttcatcgcatcgggtaacaacccagagtggatgatcctaaca
gtacttccagtacttccgccagatctacgtcctctagtacctctagatggcggtcgcttt
gcgacttctgatcttaacgatctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagctgctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactagataacggtcgtcgtggtcgtgcgatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagagcgtgaagaagcggtcgtttgggatatcctagacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctcggtatccaggcgttcgaaccagta
ctaatcgaaggtaaagcgattcagctacacccacttgtatgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaaagatcaacgtg
aaaggtgaaggcatgtacctttctggcccagaagaggctgagaaagcataccgcactaaa
caagctgagcttcatgcacgcgttaaagtacgtattacagaaaccgttgtagacgaagac
ggcaacagcactactgaaactaagatggtagataccactgttggtcgtgcaatgctatgg
caaatcgtgccagctggtctaccgtacagcatcgttaaccaaaagctaggtaagaagcaa
atctctaacctacttaacgaggcgtaccgtaaactaggtctgaaagacacggtaatcttc
gctgaccaaatcatgtacacaggtttcgcatacgcggcactttctggtgtatctgttggt
atcgacgatatggttgtaccagcagctaagtacactgaaatcgctgaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatcaggtcttgttactgcgggcgaacgctacaac
aaagttatcgatatctgggcatcgaccaacgaccgtgttgcgaaagcaatgatggaaaac
ctttcatctgaaacggtagttaaccgtgatggtgaagaggaacagcaagagtcattcaac
agcatctacatgatggcggactcgggcgctcgtggttctgcagcacagattcgtcagctt
gcgggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtaactgaacatgactgtggcactcacgaaggtgtc
gacatgatgcctcacatcgagggtggtgatgttaaagttgcactttctgagcttgctctt
ggtcgtgttgttgctgaagacgtactaaaacctggcactgaagacgttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggaagagaactcagtagacagcatg
aaagtgcgctctgtagtaacgtgtgattctgacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggccacctagtgaaccaaggtgaagcagtaggtgttatcgctgct
cagtctatcggtgaaccaggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcggcagagaacagtgttcaagttaagaacaacggttctatcaagcta
cacaacgctaaatctgtactggcagatgacggtaagatcgttatcacttctcgtgcgaca
gagctaactattattgatgagtttggtcgtacgaaagagaaacacaaactgccttacggt
acgctactaagcaaaggcgatggcgatacagttcaagctggcgaaacagttgcaaactgg
gaagcgcacacactacctatcattactgaggtagcaggtcgcatccagttcgtagacatg
attgacggcgtaacagtatctcgtcaaactgatgacctaactggtctatcttcaagcgaa
gtaactgacccagcagctcgcccttcagcaggtaaagatatgcgtccagctatcaaactt
gttgacgagcaaggtaacgatgtaatgatccctggtactgatatgccagctcactacttc
ctacctggtaaagcgattgtgaacatcgaagatggcgcagcagtaggtgttggtgcgaca
ctagcacgtattcctcagaagtctggcggtaacaaagatatcaccggtggtcttccacga
gttgctgacctatttgaagcacgtaagccgaaagagcctgcaatccttgctgagcacaca
ggtactgtgagcttcggtaaagagaccaaaggtaaacgtcgcctagtgatcacacgtgaa
agcggtgaagcttacgaagagatgattcctaagcatcgtcagttgaacgtattcgaaggt
gaaaaagttgaacgtggtgacgtgatcgcagatggtccagagtctccacacgacatccta
cgtctacgtggcgtacacgcggtaacgcagtacattgctaacgaagtacaggaagtttac
cgtctacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcagatgcta
cgtaagtgtactattactcattctggtgactctgagttcctacctggtgagcagattgag
tactcacaagttaagattgctaaccgtaacctagaagctgaaggcaaagagcctgcacgt
ttcgaacgtgaactactaggtatcactaaagcatctctagcgactgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagcagcagtttctggtaagcgt
gacgacctacgtggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaagctaaacgttctgaagcgcaagatggtccttct
gctgagcaagcaacggacaacctagcggcacttctaaacgctggtttctcttctgacgag
taa
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integrated database retrieval system
