Vibrio diabolicus: AL552_23455
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Entry
AL552_23455 CDS
T05332
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL552_23455 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vdb03021
]
AL552_23455 (rpoB)
03400 DNA repair and recombination proteins [BR:
vdb03400
]
AL552_23455 (rpoB)
Enzymes [BR:
vdb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL552_23455 (rpoB)
Transcription machinery [BR:
vdb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL552_23455 (rpoB)
DNA repair and recombination proteins [BR:
vdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL552_23455 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Cas_Cas2CT1978
DUF6155
Motif
Other DBs
NCBI-ProteinID:
AVF96423
UniProt:
A0AAP3G2J1
LinkDB
All DBs
Position
1:complement(2908396..2912424)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDLFFEKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKD
YINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGTL
DETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHAQYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVSRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLIEGGYSEAKLDTTDRKKWLELTLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKNLRGGLPIATPVFDGAPEESIKALLEL
ADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gttttggacattccatacctgctatcgatccagctcgattcgttcgacaaattcatcgaa
caggatcctgaaggtcaatacggtcttgaagccgctttccgttctgtattcccgattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgtaacttactcaaagccactacgtgtaaaacta
cgcctagttatctttgataaagacgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggtgaaattccactcatgacagacaatggtaccttcgtaattaacggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagcgat
aagggtaagacccactcttcaggtaaagttttatacaacgcacgtgttattccttaccgt
ggttcatggcttgatttcgagtttgatcctaaggataacttgtacgttcgtatcgaccgc
cgtcgtaagctaccagcatcgatcattcttcgtgcactaggtaagtcgacagaagaaatc
ctagatctcttcttcgagaaagtgaacttcgaagtgaaagaccaaactctattgatggag
ttggttccagatcgtctacgtggtgaaactgcgtcattcgacatcgaagcgaatggtaaa
gtttacgttgagcaaggtcgtcgcgtaacagctcgtcatatccgccaactagaaaaagat
ggtgttgatcacatcgaagtaccagttgagtacatcgtaggtaaagttgcatcaaaagat
tacattaatgaagcaactggcgagatcattgttaacgctaaccaggaaatcagcctggaa
gcactagcgaacctatctcaggctggccacaaagcactagaagttctattcacgaacgat
ctagaccacggtccattcatgtcagaaacactacgtatcgacagcacggttgatcgtatt
tctgcattggtagaaatctaccgcatgatgcgccctggtgagccgccaacaaaagaagct
gcagaagctctattcgaaagcctattcttctctgaagagcgttacgatctatcgactgtt
ggtcgtatgaagttcaacagctcaatcggccgtgaagatgctcaagagcaaggcacactc
gatgaaactgatatcatcgaagtgatgaagaagctgatcgcgatccgtaacggtaagggc
gaagtggacgatatcgaccacctaggcaaccgtcgtatccgttctgtaggcgaaatggct
gagaaccagttccgtgtaggtctagtacgtgttgagcgtgcagttaaagagcgtctaagc
ctaggcgatcttgacgcaatcatgcctcaagacttgatcaacgcgaagccaatttctgcg
gcagttaaagaattctttggctcttcacagctttcacagttcatggaccaaaacaacccg
ctatcagaagtaacgcataaacgtcgtatttctgcattgggtcctggcggtctaactcgt
gaacgtgctggcttcgaagtacgtgacgtacacgtaacgcactacggtcgtctatgtcct
atcgaaacgcctgaaggtccaaacatcggtctgatcaactctctatctgcgtttgcgcgt
tgtaacgagtacggtttcctagagacaccataccgtcgcgttgtagatggcgtagtaaca
gacgaagtagattacctgtctgcaatcgaagaaggccaattcgttatcgctcaggcgaac
gctaagctaaacgaagatggtacttttgcagatgagctgatcacagctcgtcagaaaggt
gaatctggtctacaccctcgtgagcacgctcagtacatggacgttgcgacaaaccaggtt
gtatctatcgctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccaacactgaaagctgacaaaccgcttgtt
ggtactggtattgaacgtaacgtagccgttgactcaggtgtaactgcagttgcgaaacgt
ggtggtgtaatccagtcagtagatgcttctcgtatcgttgttaaagtaaacgaagaagag
ctagtaccaggtgaagctggtatcgatatctacaacctaactaaatacacacgttctaac
cagaacacatgtattaaccaacgcccatgtgtgatgccaggtgaacctgtatcacgcggt
gacgtgcttgctgatggtccttcgacagacctaggtgagctagcgcttggtcaaaacatg
cgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgcttcacgacaatccacattcaagaacttacttgtgtggcg
cgtgatactaagctgggctctgaagagatcacagctgatattccaaacgtaggtgaatct
gctctgtctaaactagacgagtcaggtatcgtttacatcggtgctgaagttaagggtggc
gacatcctagttggtaaagtaacacctaaaggtgaaactcagctaacgcctgaagagaag
ctactacgtgctatcttcggtgaaaaagcatctgatgttaaagatacttcactacgtgta
cctaactctgtatcaggtacgatcatcgacgttcaagtcttcactcgcgatggcgtagag
aaagacaagcgtgcgcttgaaatcgaacagatgcagcttaaagaagcgaagaaagaccta
actgaagaattccagattcttgagggtggccttctaaaccgtgttaaagctgtattgatt
gaaggcggttactctgaagcgaaactagacacgactgatcgtaagaagtggctagagcta
acgctagaagatgacgcactacaaactcagcttgagcaacttgctgagcagtgggacgag
ctaaaagctgacttcgataagaagttcgaaactaaacgtcgtaagatcactcaaggtgat
gatttagcacctggcgtactgaagatcgttaaggtttacctagcggttaaacgtcgcatt
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccatacgatgaaaaaggtcagcctgtagacatcgtacttaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagtacacttaggtctggca
gcgaaaggtatcggtgacaagatcaaccagatggttaaagagcagcaagaactagcgaaa
ttccgtgagttcctacaaaaagtttacgacctaggcgacactcgccagaaagtagacatt
gcttctctatctgatgatgaagtacgtactctgatcaagaacttgcgtggcggtctacca
atcgcgactcctgtatttgatggtgctccagaagagtcaatcaaagcacttcttgagcta
gcagatctaccaacatcaggtcagctaacgctatttgatggtcgcacaggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttcaactggttcgtacagcctagtaactcagcagccactaggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgctacaagaaatgctaacggttaagtcggatgacgttaacggccgt
actaagatgtacaagaacatcgtagacggtaaccacagcatggaacctggcatgccagaa
tcgttcaacgtactgttgaaagagatccgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
