Vibrio diabolicus: AL552_24065
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Entry
AL552_24065 CDS
T05332
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vdb
Vibrio diabolicus
Pathway
vdb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL552_24065 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vdb03021
]
AL552_24065 (rho)
03019 Messenger RNA biogenesis [BR:
vdb03019
]
AL552_24065 (rho)
Transcription machinery [BR:
vdb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AL552_24065 (rho)
Messenger RNA biogenesis [BR:
vdb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AL552_24065 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AVF96516
LinkDB
All DBs
Position
1:complement(3025928..3027187)
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AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
DDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgaactgaagaacagacctgtgtctgaccttgtaaaactgggcgaaagc
ttaggattagagaacctagctcgcttaagaaaacaagacatcatcttcgcgattttaaaa
gcgcacgctaaaggcggcgaagacatctttggcgatggggttctggaaattctgcaagac
ggctttggtttcctacgcagtgcagatagttcataccttgcgggtccggacgatatctac
gtatcaccaagtcagattcgtcgttttaacctacgtactggtgactctatcgctggtaaa
attcgtccaccaaaagacggtgaacgctactttgcccttctaaaagtcaataccgttaac
gacgacaaaccagacaacgctcgtaacaagatcctatttgaaaaccttacccctctacat
gcaaatgaacgcatggtaatggagcgtggtaacggttctacagaagacatcacagcacgt
gttttagatttggcatcgcctatcggtaaaggtcaacgtggtctgattgttgctccgcca
aaagcgggtaagacaatgcttctgcaaaatattgctcaaagcatcgcatacaaccatcca
gagtgtgagttgatggtacttcttatcgacgaacgtccagaagaagtaacagagatgcag
cgtctagttaaaggtgaagtagtcgcgtcgactttcgatgagccagcatctcgtcacgta
caagtagcggaaatggtaatcgagaaagcaaaacgtcttgttgaacacaagaaagacgtg
gttatcctgcttgactctatcactcgtctcgctcgtgcttacaacaccgtagtaccttca
tcaggcaaagtactgacaggtggtgtggatgcaaacgcactacaccgtcctaagcgtttc
ttcggtgcggcacgtaacgttgaagagggtggtagcctaacgatcatcgcaacggcacta
gttgatactggttctaagatggatgaagttatctacgaagagttcaagggtacaggtaac
atggaactgcacttgaaccgtaagattgctgagaagcgtgtattccctgcgattgacttc
aaccgttcgggtacacgtcgtgaagagctactgacgaagactgatgaactacagaaaatg
tggattctgcgtaagatcgttcacccaatgggcgaaatcgacgcaatggaattcctcatt
gataagctagcgatgacgaagaccaacgatgagttcttcgatgcgatgcgtcgtcagtaa
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