Vibrio diabolicus: AL552_24125
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Entry
AL552_24125 CDS
T05332
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vdb
Vibrio diabolicus
Pathway
vdb03420
Nucleotide excision repair
vdb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vdb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL552_24125 (uvrD)
03430 Mismatch repair
AL552_24125 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vdb03400
]
AL552_24125 (uvrD)
Enzymes [BR:
vdb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL552_24125 (uvrD)
DNA repair and recombination proteins [BR:
vdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL552_24125 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AL552_24125 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AVF96524
LinkDB
All DBs
Position
1:complement(3039286..3041460)
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AA seq
724 aa
AA seq
DB search
MMDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDEKQWPARQVSWWINGKKDEGLRPSHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
DCHVMIVGDDDQSIYGWRGAKVENIEKFTLEFPSVNTIRLEQNYRSTKTILEASNTLIAN
NTERMGKELWTDGNVGEPISVYSAYNELDEARFAVNKIKEWQENGGALNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIRDALSYLRLMANRNDDAAFERVVNTPTRGLG
DKTLETIRRAARDRGCTMWEASLAMLDEQVLPGRAAGALSRFVELITALEDDTLEMPLHE
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPSSSGRF
SQTAVKENFNETGFSLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccatctctattactcgacggtctaaacgataaacagcgtgaagccgttgca
gctcctctagaaaacttacttgtccttgctggtgcagggagtggtaagactcgcgttctt
gttcaccgtatcgcttggcttatgtcagtcgagcaagcttctcctttctcgatcatgtcg
gtcaccttcaccaataaagcggcagcagaaatgcgtggtcgtattgaagagttgatgatg
ggcagtgcatctggcatgtggaatgggactttccacggtatctgtcaccgcattttgcgt
gcacactatcttgatgccaagctaccggaagatttccaaatcatagacagcgatgatcag
cagcgtttgttaaagcgtttgatcaaagcacaaaacttggatgaaaagcagtggcctgca
cgccaagtttcatggtggattaatggtaagaaggacgaaggattacgcccatcgcatatc
gacgcttatcacgatccagtgaccaaaacttatttgcagctgtataccgcttaccaagag
gcgtgtgatcgtgctggcttagtggactttgcggaaattttgctgcgcgcgcatgagcta
ctgcgtgacaacaagtttgtgcgtgaacactaccaagcacgctttaagcatatcttggtt
gacgaattccaagacaccaacaacattcaatacgcttggctacgcatgatggctggccca
gattgtcacgtgatgattgtaggtgacgacgaccagtcaatttatggttggcgcggtgca
aaagtcgagaacattgagaagttcacgctggagtttccgagcgtgaacaccatccgtctc
gaacaaaactatcgttcgaccaagacgattcttgaagcgtccaataccttgattgcgaac
aacactgaacgcatgggtaaagagctgtggacggatggcaatgtgggcgagccgatctcg
gtttacagcgcttataacgagcttgatgaagcgcgctttgcggtcaataaaatcaaagag
tggcaagagaatggcggcgcattgaatgatgctgcgatgctgtatcgtaacaacgcgcaa
tctcgtgttttggaagaagcattaattcaggcaggcttaccgtaccgtatttacggaggc
atgcgattcttcgagcgtcaagaaatcagagatgcgttgagctacttgcgtttgatggcg
aatcgcaacgatgatgccgcgtttgaacgtgtcgtgaataccccaacacgtggtctgggc
gataagacgctagagactatccgtcgtgcagctcgtgatagagggtgcactatgtgggaa
gccagtctggcaatgctcgatgagcaagtattaccgggtcgagcagctggtgcgttaagt
cgttttgtcgaattaatcactgcgctggaagacgatacactagaaatgccattgcacgag
caaacggaccacgtgatcaagtactcgggtttgtttgcgatgtatgagcaagagaagggc
gaaaagtctaaagctcgcatagaaaacttggaggagctggttaccgccactcgccaattc
gaaaaaccagaagaagcggaagaaatgtctctgctgacggcatttttaacacatgcggct
ctagaagcgggcgaaggtcaggcggacgaatttgaagatgcagtccaactgatgacgctg
catagtgcgaaaggtttggaattcccattggtattcatggtcggtgtggaagaaggtatg
ttcccaagccagatgtccgctgaagaggcagggcgtttggaagaagagcgccgtctgtgt
tatgtgggcatgacgcgcgcgatgcaaaagctctacattacttacgcggaaatgcgtcgc
ctatatggccaggacaaataccacaaaccatcgcgctttattcgtgaattaccagaaacg
tgtttggatgaagtgcgcatgaaggcgcaagtgagtcgcccttcaagtagcggacgtttt
agccaaaccgcagtaaaagaaaacttcaatgagactggtttttcactaggttctcgtgtg
atgcatccgaaatttggtgaaggaacgatcatcaactttgagggcagtggcccacaaagc
cgagtgcagattgctttcaacggtgaaggcattaaatggttagtcaccgcttacgcgaga
ctggagaagctgtag
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